LOCUS MH498741 2151 bp cRNA linear VRL 09-AUG-2018
DEFINITION Influenza A virus (A/environment/Chile/C20141/2016(H13N9)) segment
3 polymerase PA (PA) and PA-X protein (PA-X) genes, complete cds.
ACCESSION MH498741
VERSION MH498741.1
DBLINK BioProject: PRJNA309181
KEYWORDS .
SOURCE Influenza A virus
ORGANISM Influenza A virus
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Insthoviricetes; Articulavirales;
Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
influenzae.
REFERENCE 1 (bases 1 to 2151)
AUTHORS Bravo-Vasquez,N., Bahl,J., Hamilton-West,C. and Schultz-Cherry,S.
CONSRTM Centers of Excellence for Influenza Research and Surveillance
(CEIRS)
TITLE Direct Submission
JOURNAL Submitted (18-JUN-2018) St. Jude Center of Excellence for Influenza
Research and Surveillance (CEIRS), Memphis, TN 38105, USA
COMMENT This submission was made by the CEIRS Data Processing and
Coordinating Center (DPCC) on behalf of the St. Jude Center of
Excellence for Influenza Research and Surveillance (CEIRS). This
work was supported by National Institute of Allergy and Infectious
Diseases, National Institutes of Health, grant HHSN272201400006C.
##Assembly-Data-START##
Assembly Method :: IRMA v. 0.6.7
Sequencing Technology :: IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2151
/organism="Influenza A virus"
/mol_type="viral cRNA"
/strain="A/environment/Chile/C20141/2016"
/serotype="H13N9"
/isolation_source="feces"
/db_xref="taxon:11320"
/segment="3"
/country="Chile"
/collection_date="13-Dec-2016"
gene 1..2151
/gene="PA"
CDS 1..2151
/gene="PA"
/codon_start=1
/product="polymerase PA"
/protein_id="AXF49379.1"
/translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEV
CFMYSDFHFIDERGESIIMESGDPNALLKHRFEIIEGRDRTMAWTVVNSICNTTGVEK
PKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKAD
YTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERGEETIEERFEITGTMRRLADQS
LPPNFSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNARIEPFLKTTPRPLRLPEGPPC
SQRSKFLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPNIVKPHEKGINPNY
LLAWRQVLAELQDIENEEKIPKTKNMKKTSQLKWALGENMAPEKVDFEDCKDVSDLRQ
YDSDEPEQRSLASWIQSEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEV
SHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGR
SHLRNDTDVVNFVSMEFSLTDPRLDPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVR
TNGTSKIKMKWGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGES
PKGVEEGSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALKDNLEPGTFD
LGGLYEAIEECLINDPWVLLNASWFNSFLTHALK"
gene 1..760
/gene="PA-X"
CDS join(1..570,572..760)
/gene="PA-X"
/ribosomal_slippage
/codon_start=1
/product="PA-X protein"
/protein_id="AXF49380.1"
/translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEV
CFMYSDFHFIDERGESIIMESGDPNALLKHRFEIIEGRDRTMAWTVVNSICNTTGVEK
PKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKAD
YTLDEESRARIKTRLFTIRQEMASRGLWDSFVSPREAKRQLKKDLKLQEPCAGSPTKV
SHRTSPALKTLEPMWMDLNRTAALRASFLKCPKK"
BASE COUNT 701 a 419 c 522 g 509 t
ORIGIN
1 atggaagatt ttgtgcgaca atgcttcaat ccaatgatcg tcgagcttgc ggaaaaggca
61 atgaaggaat atggggaaga cccaaaaatc gagacaaaca aatttgctgc aatatgcaca
121 cacttagaag tgtgtttcat gtattcagat ttccatttca ttgatgaacg aggtgaatca
181 ataatcatgg aatctggcga tccaaatgca ctcctaaaac accgatttga aataattgaa
241 gggagagacc gcactatggc ctggacagta gtgaacagta tctgcaatac cacaggagtc
301 gaaaaaccca agtttctccc ggatttatac gattacaaag agaatcgctt cattgaaatt
361 ggagtaacca ggagggaagt ccatatatac tatttagaaa aggccaataa gataaagtct
421 gagaagacac acattcatat cttttcattc actggggaag aaatggctac taaagcagac
481 tacacccttg atgaagaaag tagagcgagg atcaaaacca ggctattcac cataaggcaa
541 gagatggcca gtagaggcct ctgggattcc tttcgtcagt ccgagagagg cgaagagaca
601 attgaagaaa gatttgaaat tacaggaacc atgcgcaggc tcgccgacca aagtctccca
661 ccgaacttct ccagccttga aaactttaga gcctatgtgg atggatttga accgaacggc
721 tgcattgagg gcaagctttc tcaaatgtcc aaagaagtaa atgcaagaat tgaaccattt
781 ctgaagacaa caccacggcc tctgagattg ccggaagggc ctccttgctc tcagcggtcg
841 aagtttcttc tgatggatgc tctgaagctc agtattgaag acccgagtca tgaaggcgag
901 gggataccgc tgtatgatgc gatcaaatgc atgaagacct tttttggctg gaaagagcct
961 aacattgtca agccacatga aaagggaata aaccccaatt atctcctggc ttggaggcaa
1021 gtgttagcag aactacagga tattgaaaac gaggagaaga ttccaaaaac gaaaaacatg
1081 aagaaaacaa gccaattgaa gtgggcactt ggtgaaaata tggcaccaga gaaagtggac
1141 tttgaagatt gcaaggatgt cagtgatttg aggcagtatg acagtgacga gcctgagcaa
1201 agatcactag caagttggat tcaaagtgag ttcaacaaag cttgtgaatt gactgactca
1261 agttggatag agctcgatga aataggagag gacgttgccc cgatcgaaca cattgcaagc
1321 atgaggagga attactttac cgctgaagtg tctcactgca gggcaacaga gtacataatg
1381 aagggagtat acataaacac agctctgctc aatgcttctt gtgcggcaat ggatgatttt
1441 cagctgatcc caatgataag caaatgcaga accaaagaag ggcggcggaa gacaaatctg
1501 tatgggttca taataaaggg aagatctcat ttgaggaatg atactgatgt agtgaatttt
1561 gtgagcatgg agttttctct tactgatcct agactagacc cacataaatg ggagaagtac
1621 tgtgtccttg aaatagggga catgctcctg cggactgcaa taggccaagt atcgagaccc
1681 atgttcttgt atgtgagaac taatggaacc tccaaaatca aaatgaaatg gggtatggag
1741 atgagacgtt gtcttcttca atctcttcag caaattgaaa gcatgattga ggccgaatcc
1801 tctgtcaaag agaaggacat gaccaaggaa ttcttcgaaa acaaatcaga gacatggccc
1861 attggggaat cccccaaagg agtagaagaa ggttccattg gaaaggtgtg caggactctg
1921 ctggcaaaat ctgttttcaa cagcttgtat gcatctccac aacttgaggg attttcagct
1981 gagtcaagaa agctgctcct cattgttcag gcacttaagg acaacctgga acctggtacc
2041 ttcgatcttg gagggctata tgaagcaatt gaggagtgcc tgattaatga tccctgggtt
2101 ttgcttaatg catcttggtt caactccttc ctcacacatg cactgaaata g
//