LOCUS MH498707 1698 bp cRNA linear VRL 09-AUG-2018 DEFINITION Influenza A virus (A/environment/Chile/C20141/2016(H13N9)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION MH498707 VERSION MH498707.1 DBLINK BioProject: PRJNA309181 KEYWORDS . SOURCE Influenza A virus ORGANISM Influenza A virus Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus influenzae. REFERENCE 1 (bases 1 to 1698) AUTHORS Bravo-Vasquez,N., Bahl,J., Hamilton-West,C. and Schultz-Cherry,S. CONSRTM Centers of Excellence for Influenza Research and Surveillance (CEIRS) TITLE Direct Submission JOURNAL Submitted (18-JUN-2018) St. Jude Center of Excellence for Influenza Research and Surveillance (CEIRS), Memphis, TN 38105, USA COMMENT This submission was made by the CEIRS Data Processing and Coordinating Center (DPCC) on behalf of the St. Jude Center of Excellence for Influenza Research and Surveillance (CEIRS). This work was supported by National Institute of Allergy and Infectious Diseases, National Institutes of Health, grant HHSN272201400006C. ##Assembly-Data-START## Assembly Method :: IRMA v. 0.6.7 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1698 /organism="Influenza A virus" /mol_type="viral cRNA" /strain="A/environment/Chile/C20141/2016" /serotype="H13N9" /isolation_source="feces" /db_xref="taxon:11320" /segment="4" /country="Chile" /collection_date="13-Dec-2016" gene 1..1698 /gene="HA" CDS 1..1698 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="AXF49378.1" /translation="MEVPVLALLMLTSICVQADRICVGYLSTNSSERVDTLLENNVPV TSSVDLVETNHTGTYCSLSGISPVHLGDCSFEGWILGNPACASNLGVREWSYLIEDPS APHGLCYPGELDNNGELRHLFSGIKSFSRTQLIAPTSWGEVNDGVTNACQDKGASSFY RNLVWFVARGNNYPVIRGTYNNTTGRDVLVIWGIHHPVSTAEARKLYAKDDPYTLAST STWSKKYNLETGTRPGYNGQRSWMKIYWYLMHPGDSISFESNGGLLAPRYGYIIEEYG KGRIFQSRIRIAKCNTKCQTSVGGINTNKTFQNIERNALGDCPKYIKSGQLKLATGLR NVPAISNRGLFGAIAGFIEGGWPGLINGWYGFQHQNEQGTGIAADKESTQKAIDQITT KINNIIEKMNGNYDSIRGEFNQVEQRINMLADRIDDAVTDIWSYNAKLLVLLENDKTL DMHDANVRNLHDQVRRVLRANAIDEGNGCFELLHKCNDTCMETIRNGTYNHIEYEEES KLKRQEIEGIKLKSDDNVYKALSIYSCIASSIVLVGLILAFIMWACSSGSCRFNICI" sig_peptide 1..54 /gene="HA" mat_peptide 55..1026 /gene="HA" /product="HA1" mat_peptide 1027..1695 /gene="HA" /product="HA2" BASE COUNT 563 a 304 c 409 g 422 t ORIGIN 1 atggaagttc cagtactcgc gctcttaatg ttaaccagta tatgcgtaca agctgatagg 61 atttgtgttg ggtacttaag cacaaactca tcagaaaggg ttgacacact gctagagaat 121 aatgtcccgg ttacaagctc tgttgatttg gttgaaacta atcacacagg aacatattgt 181 tctttgagtg gaattagtcc agtgcacttg ggagactgta gctttgaggg ctggattcta 241 gggaaccctg cctgtgccag caacctgggg gttagagaat ggtcatattt gattgaagac 301 ccttctgctc ctcatgggtt atgctatcca ggagagttag acaacaatgg agaattgagg 361 cacttgttta gtgggatcaa atctttcagt agaacacaat tgattgcacc tacttcttgg 421 ggggaggtga atgatggagt aacgaatgcc tgtcaagaca aaggagctag cagcttttac 481 cggaacttgg tatggtttgt ggcaagagga aataactatc ctgtgattcg cgggacctac 541 aacaacacca cgggcagaga tgtcttggtt atatggggta tacatcaccc tgtctctaca 601 gctgaagcga gaaaactgta tgccaaagac gatccttaca cattggcatc taccagtaca 661 tggagcaaaa agtacaacct agaaactgga acccggcctg gatacaatgg ccaaaggagt 721 tggatgaaga tttactggta tctgatgcac cccggggatt caatcagttt cgaaagcaat 781 ggaggactac tggctcccag atatggttac attattgagg aatatggaaa agggcgaatt 841 ttccaaagcc gcattcgcat tgccaaatgt aacactaaat gccagacatc ggttggtgga 901 ataaacacta acaaaacatt tcaaaacata gagagaaatg cacttggaga ttgcccgaaa 961 tacataaaat ctggacagct caaattggcc actggactta ggaatgtacc tgccatatca 1021 aacagaggat tgtttggggc tattgcaggc ttcatagaag gtggttggcc aggattaata 1081 aatggctggt atggattcca acatcagaat gaacaaggaa cgggcatagc tgcagacaaa 1141 gaatcaacac aaaaggctat tgaccaaata acaactaaga taaacaatat aatagaaaaa 1201 atgaatggga actatgactc aatacgaggt gaattcaatc aggtggaaca aaggataaat 1261 atgcttgcag acaggataga tgatgctgta actgacatat ggtcatacaa tgcaaagctt 1321 cttgttttgc tagaaaacga caaaactcta gacatgcacg acgctaatgt caggaacctt 1381 catgatcaag tccgtagagt gctgagggcc aatgcaattg atgaggggaa tggatgtttt 1441 gaactcctcc ataaatgtaa tgatacctgt atggagacaa taagaaatgg aacgtacaat 1501 catatagaat atgaagagga atcaaaatta aaaaggcagg agatagaagg tataaagctg 1561 aagtcagacg acaatgtata caaagcattg tcgatttaca gctgcattgc aagcagtatt 1621 gtattggtag gactcatact tgcattcatc atgtgggcat gcagcagtgg cagttgccga 1681 ttcaatattt gtatataa //