LOCUS       MH498707                1698 bp    cRNA    linear   VRL 09-AUG-2018
DEFINITION  Influenza A virus (A/environment/Chile/C20141/2016(H13N9)) segment
            4 hemagglutinin (HA) gene, complete cds.
ACCESSION   MH498707
VERSION     MH498707.1
DBLINK      BioProject: PRJNA309181
KEYWORDS    .
SOURCE      Influenza A virus
  ORGANISM  Influenza A virus
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Insthoviricetes; Articulavirales;
            Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
            influenzae.
REFERENCE   1  (bases 1 to 1698)
  AUTHORS   Bravo-Vasquez,N., Bahl,J., Hamilton-West,C. and Schultz-Cherry,S.
  CONSRTM   Centers of Excellence for Influenza Research and Surveillance
            (CEIRS)
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2018) St. Jude Center of Excellence for Influenza
            Research and Surveillance (CEIRS), Memphis, TN 38105, USA
COMMENT     This submission was made by the CEIRS Data Processing and
            Coordinating Center (DPCC) on behalf of the St. Jude Center of
            Excellence for Influenza Research and Surveillance (CEIRS). This
            work was supported by National Institute of Allergy and Infectious
            Diseases, National Institutes of Health, grant HHSN272201400006C.
            
            ##Assembly-Data-START##
            Assembly Method       :: IRMA v. 0.6.7
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Influenza A virus"
                     /mol_type="viral cRNA"
                     /strain="A/environment/Chile/C20141/2016"
                     /serotype="H13N9"
                     /isolation_source="feces"
                     /db_xref="taxon:11320"
                     /segment="4"
                     /country="Chile"
                     /collection_date="13-Dec-2016"
     gene            1..1698
                     /gene="HA"
     CDS             1..1698
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="AXF49378.1"
                     /translation="MEVPVLALLMLTSICVQADRICVGYLSTNSSERVDTLLENNVPV
                     TSSVDLVETNHTGTYCSLSGISPVHLGDCSFEGWILGNPACASNLGVREWSYLIEDPS
                     APHGLCYPGELDNNGELRHLFSGIKSFSRTQLIAPTSWGEVNDGVTNACQDKGASSFY
                     RNLVWFVARGNNYPVIRGTYNNTTGRDVLVIWGIHHPVSTAEARKLYAKDDPYTLAST
                     STWSKKYNLETGTRPGYNGQRSWMKIYWYLMHPGDSISFESNGGLLAPRYGYIIEEYG
                     KGRIFQSRIRIAKCNTKCQTSVGGINTNKTFQNIERNALGDCPKYIKSGQLKLATGLR
                     NVPAISNRGLFGAIAGFIEGGWPGLINGWYGFQHQNEQGTGIAADKESTQKAIDQITT
                     KINNIIEKMNGNYDSIRGEFNQVEQRINMLADRIDDAVTDIWSYNAKLLVLLENDKTL
                     DMHDANVRNLHDQVRRVLRANAIDEGNGCFELLHKCNDTCMETIRNGTYNHIEYEEES
                     KLKRQEIEGIKLKSDDNVYKALSIYSCIASSIVLVGLILAFIMWACSSGSCRFNICI"
     sig_peptide     1..54
                     /gene="HA"
     mat_peptide     55..1026
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1027..1695
                     /gene="HA"
                     /product="HA2"
BASE COUNT          563 a          304 c          409 g          422 t
ORIGIN      
        1 atggaagttc cagtactcgc gctcttaatg ttaaccagta tatgcgtaca agctgatagg
       61 atttgtgttg ggtacttaag cacaaactca tcagaaaggg ttgacacact gctagagaat
      121 aatgtcccgg ttacaagctc tgttgatttg gttgaaacta atcacacagg aacatattgt
      181 tctttgagtg gaattagtcc agtgcacttg ggagactgta gctttgaggg ctggattcta
      241 gggaaccctg cctgtgccag caacctgggg gttagagaat ggtcatattt gattgaagac
      301 ccttctgctc ctcatgggtt atgctatcca ggagagttag acaacaatgg agaattgagg
      361 cacttgttta gtgggatcaa atctttcagt agaacacaat tgattgcacc tacttcttgg
      421 ggggaggtga atgatggagt aacgaatgcc tgtcaagaca aaggagctag cagcttttac
      481 cggaacttgg tatggtttgt ggcaagagga aataactatc ctgtgattcg cgggacctac
      541 aacaacacca cgggcagaga tgtcttggtt atatggggta tacatcaccc tgtctctaca
      601 gctgaagcga gaaaactgta tgccaaagac gatccttaca cattggcatc taccagtaca
      661 tggagcaaaa agtacaacct agaaactgga acccggcctg gatacaatgg ccaaaggagt
      721 tggatgaaga tttactggta tctgatgcac cccggggatt caatcagttt cgaaagcaat
      781 ggaggactac tggctcccag atatggttac attattgagg aatatggaaa agggcgaatt
      841 ttccaaagcc gcattcgcat tgccaaatgt aacactaaat gccagacatc ggttggtgga
      901 ataaacacta acaaaacatt tcaaaacata gagagaaatg cacttggaga ttgcccgaaa
      961 tacataaaat ctggacagct caaattggcc actggactta ggaatgtacc tgccatatca
     1021 aacagaggat tgtttggggc tattgcaggc ttcatagaag gtggttggcc aggattaata
     1081 aatggctggt atggattcca acatcagaat gaacaaggaa cgggcatagc tgcagacaaa
     1141 gaatcaacac aaaaggctat tgaccaaata acaactaaga taaacaatat aatagaaaaa
     1201 atgaatggga actatgactc aatacgaggt gaattcaatc aggtggaaca aaggataaat
     1261 atgcttgcag acaggataga tgatgctgta actgacatat ggtcatacaa tgcaaagctt
     1321 cttgttttgc tagaaaacga caaaactcta gacatgcacg acgctaatgt caggaacctt
     1381 catgatcaag tccgtagagt gctgagggcc aatgcaattg atgaggggaa tggatgtttt
     1441 gaactcctcc ataaatgtaa tgatacctgt atggagacaa taagaaatgg aacgtacaat
     1501 catatagaat atgaagagga atcaaaatta aaaaggcagg agatagaagg tataaagctg
     1561 aagtcagacg acaatgtata caaagcattg tcgatttaca gctgcattgc aagcagtatt
     1621 gtattggtag gactcatact tgcattcatc atgtgggcat gcagcagtgg cagttgccga
     1681 ttcaatattt gtatataa
//