LOCUS MH498688 2280 bp cRNA linear VRL 09-AUG-2018
DEFINITION Influenza A virus (A/environment/Chile/C20141/2016(H13N9)) segment
1 polymerase PB2 (PB2) gene, complete cds.
ACCESSION MH498688
VERSION MH498688.1
DBLINK BioProject: PRJNA309181
KEYWORDS .
SOURCE Influenza A virus
ORGANISM Influenza A virus
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Insthoviricetes; Articulavirales;
Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
influenzae.
REFERENCE 1 (bases 1 to 2280)
AUTHORS Bravo-Vasquez,N., Bahl,J., Hamilton-West,C. and Schultz-Cherry,S.
CONSRTM Centers of Excellence for Influenza Research and Surveillance
(CEIRS)
TITLE Direct Submission
JOURNAL Submitted (18-JUN-2018) St. Jude Center of Excellence for Influenza
Research and Surveillance (CEIRS), Memphis, TN 38105, USA
COMMENT This submission was made by the CEIRS Data Processing and
Coordinating Center (DPCC) on behalf of the St. Jude Center of
Excellence for Influenza Research and Surveillance (CEIRS). This
work was supported by National Institute of Allergy and Infectious
Diseases, National Institutes of Health, grant HHSN272201400006C.
##Assembly-Data-START##
Assembly Method :: IRMA v. 0.6.7
Sequencing Technology :: IonTorrent
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2280
/organism="Influenza A virus"
/mol_type="viral cRNA"
/strain="A/environment/Chile/C20141/2016"
/serotype="H13N9"
/isolation_source="feces"
/db_xref="taxon:11320"
/segment="1"
/country="Chile"
/collection_date="13-Dec-2016"
gene 1..2280
/gene="PB2"
CDS 1..2280
/gene="PB2"
/codon_start=1
/product="polymerase PB2"
/protein_id="AXF49376.1"
/translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPA
LRMKWMMAMKYPITADKRIMEMIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRN
GPTTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDINPGHADLSAKEAQ
DVIMEVVFPNEVGARILTSESQLTITKEKKEELQDCKIAPLMVAYMLERELVRKTRFL
PVAGGTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRATVSADP
LASLLEMCHSTQIGGIRMVDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTS
GSSVKREEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQ
SIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWG
IEPIDNVMGMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQR
GNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWETVKIQWSQ
DPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAA
PPEQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEG
TAGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKTNVLIGQGDVVLVMKRKRD
SSILTDSQTATKRIRMAIN"
BASE COUNT 758 a 433 c 597 g 492 t
ORIGIN
1 atggagagaa taaaagaact aagagatcta atgtcacagt ctcgcactcg cgagatactc
61 accaaaacca ctgtggacca catggccata ataaagaagt acacatcagg aaggcaagag
121 aagaaccccg cactcaggat gaagtggatg atggcaatga agtacccaat tacagcagat
181 aagagaataa tggaaatgat cccagaaagg aatgaacagg gacaaaccct ttggagcaaa
241 acaaatgatg ctggctcaga ccgagtgatg gtatcacctc tggccgtaac atggtggaac
301 aggaatggac caacaactag tacagttcat tacccgaagg tatataaaac ttatttcgaa
361 aaagtcgaaa ggttgaaaca cgggaccttt ggccctgtcc actttagaaa tcaagttaaa
421 ataagacgga gggttgacat aaaccctggc catgcagacc tcagtgccaa agaggcacag
481 gatgtaatca tggaagtcgt tttcccaaat gaagtgggag cgaggatact aacatcggag
541 tcacaactga cgataacaaa agaaaagaaa gaagaacttc aggactgcaa gatcgccccc
601 ttgatggttg catacatgct ggaaagagaa ctggttcgta aaacgaggtt cctaccagtg
661 gctggtggga caagcagtgt ctacattgag gtgctgcatt tgacccaggg gacatgctgg
721 gaacaaatgt acaccccagg aggggaggtg aggaatgatg atgttgacca aagcttaatt
781 atcgctgcca ggaacatagt aagaagagca acagtatcag cagacccact agcatctcta
841 ttggagatgt gccacagcac acagattgga ggaataagga tggtagacat tctccggcag
901 aatccaacag aggaacaagc cgtggacata tgcaaagcag caatgggctt aaggattagc
961 tcatctttca gctttggcgg atttactttc aaaagaacaa gcgggtcgtc agttaagaga
1021 gaagaagaag tgcttacggg caaccttcaa acattgaaaa taagagtaca tgagggatat
1081 gaagagttca ctatggttgg aaggagagca acagccatcc tcaggaaggc aaccagaaga
1141 ttaatccagc taattgtaag tgggagagac gagcagtcaa ttgctgaggc gataattgtg
1201 gccatggtat tctcacagga ggattgtatg atcaaggcag ttcgaggtga tctgaacttt
1261 gtcaataggg caaatcagcg gctaaaccca atgcatcaac tcttgagaca cttccaaaag
1321 gatgccaaag tgcttttcca gaattgggga attgaaccca ttgacaatgt aatgggaatg
1381 atcgggatat tgcccgacat gaccccaagc actgagatgt cgctaagggg gataagagtc
1441 agtaagatgg gagttgatga atattccagc acagagagag tagtggtgag tattgatcgg
1501 tttttaagag ttcgggatca acgggggaat gtgttattgt cgcctgaaga ggtcagcgag
1561 acacaaggga cagagaagct aacaataact tattcgtcat caatgatgtg ggaaataaat
1621 ggtcctgaat cggttttggt caatacttac cagtggatca ttaggaactg ggaaactgtg
1681 aaaattcaat ggtcacagga tcccacgatg ttatataata agatggaatt tgaaccattt
1741 cagtctctgg tccctaaggc agccagaggc cagtacagtg gattcgtgag gacattgttc
1801 cagcaaatgc gggatgtact tggaacattc gacactgttc aaataataaa acttctaccc
1861 tttgctgctg ctccaccaga acaaagtaga atgcagttct cctctttgac cgtgaacgtg
1921 aggggatcag gaatgagaat actagtaagg ggcaattccc cagtgttcaa ttacaataag
1981 gccaccaaga ggcttacagt tctcgggaaa gatgcaggtg cattgaccga agatccagat
2041 gaaggcacag ctggagtgga gtctgctgtt ttgagaggat ttctcatctt gggcaaagaa
2101 gacaagagat atggcccagc attgagcatc aatgaactga gcaatcttgc aaaaggagag
2161 aagactaatg tgttaatcgg gcaaggagac gtagtgttgg taatgaaacg gaaacgggac
2221 tctagcatac ttactgacag ccagacagcg accaaaagga ttcggatggc catcaattag
//