LOCUS LJ661303 3229 bp mRNA linear TSA 19-MAR-2016
DEFINITION TSA: Solenopsis invicta mRNA, contig: c69320.graph_c0_seq1.
ACCESSION LJ661303
VERSION LJ661303.1
DBLINK BioProject:PRJDB4088
Sequence Read Archive:DRR042171, DRR042172, DRR042173, DRR042174,
DRR042175, DRR042176
BioSample:SAMD00035829, SAMD00035830, SAMD00035831, SAMD00035832,
SAMD00035833, SAMD00035834
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Solenopsis invicta (red fire ant)
ORGANISM Solenopsis invicta
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis.
REFERENCE 1 (bases 1 to 3229)
AUTHORS Mikheyev,A.S., Morandin,C. and Grau,M.
TITLE Direct Submission
JOURNAL Submitted (11-AUG-2015) to the DDBJ/EMBL/GenBank databases.
Contact:Alexander Mikheyev
Okinawa Institute of Science and Technology, Ecology and
Evolution; 1919-1, Tancha, Okinawa 904-0495, Japan
REFERENCE 2
AUTHORS Morandin,C., Tin,M.M.Y., Abril,S., Gomez,C., Pontieri,L.,
Schiott,M., Sundstrom,L., Tsuji,K., Pedersen,J.S., Helantera,H.
and Mikheyev,A.S.
TITLE Comparative transcriptomics reveals the conserved building blocks
involved in parallel evolution of diverse phenotypic traits in ants
JOURNAL Genome Biol. 17, 43 (2016)
COMMENT ##Assembly-Data-START##
Assembly Method :: Trinity v. r20130225
Sequencing Technology :: Illumina HiSeq 2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3229
/db_xref="taxon:13686"
/dev_stage="adult"
/mol_type="mRNA"
/note="contig: c69320.graph_c0_seq1"
/note="polygynous"
/organism="Solenopsis invicta"
/tissue_type="whole body"
BASE COUNT 1013 a 642 c 608 g 966 t
ORIGIN
1 tttttttttt ttttttttat acatattgac cttatacttt attatgttta ttattattcg
61 attattcatg ctcaattgat aataatatta atgataatat gtaattataa tattaataat
121 agaataataa taaaaaaaaa ttaattatct tcaattcttg tgacagctgc ctcaatgccg
181 taaagttcct agcaatccta cagagtttat atttatttga tgcaagtact tcagagactg
241 catttgtatg cctcatatag tacagtcaat tctttaaaaa ttcttactaa tcttctttta
301 aaataaaaaa ttgtttaaaa atatcaatta aaaaaaaaaa ataatacatt aactcttgcc
361 ccaaataata tgcccaagct ttttttaaga aacgattcac ttgtcttaaa tattcgaaac
421 acaaaattaa atcatagcat tttaaaaatc gatgctctct atgtatggcc gcttcattct
481 cttatcgtat acaaaaagcg tgacaaatgt ttctattatc aaatcatgtt tcctccatcg
541 gtgtataatt catgctagaa cgaattatag ctttcctcta tgcgttgaaa aattgcagag
601 aaaaagcaat gagcaagttg atttccatga gcaatttttt tctgaaatat tgatttttta
661 caagtcaaaa catatgcgaa agctataaca cgctccgtta tacgtacaac atacatggag
721 acacgtaaat atctattata tttacatgca ttaagcgata ggagaaatat ctgacatata
781 caaatattaa ttttcaatag taatgtcaga gaagcaattt ttagtaatct acttagtttg
841 taattcttaa ttataataaa tgtatcttta ataaaagcaa ataaaagaag taattttaaa
901 gtttgaaaga gaaaagtaaa tcgtaagcca aattatctta aaattagaac atttctatat
961 gtgaaattac aaatacgtaa tattttagag tcttagagtt atacgtaatt gtaccgcata
1021 tgtaaatgtt tgcaaatttg cctttttttc actaaattaa gaaacaaact gttttacctg
1081 atgattgaat gatcgttcgc tttgaaatgc acatagatat tctcaaacgt ttgtgaaatg
1141 atgaaattaa tttagaggcg cttggacata ttcaaagaga aaatgtgacg gactattaga
1201 agtatccgtt aatatttcat ccgttaatat ttcatctgtt aatatttcag acgaggctaa
1261 ttctatcgga tgagcgtccc tccacggatc gatatcgttt ccaccgatgt ctagtccgag
1321 tcgcaaatta gctggtgtat tgccaataac aaagtgatct tcggtcaaag gtagagcatc
1381 tttcaataaa agccaaatat cttcatcagc aacaatatgg accttaggga taggaaatcc
1441 attgaatggt gaagcaacag gcaatgtgta ggcccccatg ttttcgaaaa ttatccattc
1501 gccaagttcc atatcatgta acataatatt ttcaacgatt ctatccagtc cgtcacacgt
1561 tggaccccat acactcgaag caatcatctt tccacaacca ttctttagag gaataggagt
1621 tacatgttga tgatcgtaga gcagacaatt aaatgatcca taaacgccat cgttaatata
1681 atacatattg tgcgtaacag cgttggaatc gccgcgtata gaacgcttgc tatggatact
1741 cgttgccaat gtgaatgcag atgcgacata aaagcggccc ggttcagcaa tcacgtgaac
1801 agcatcagtg ttgaaatatt catcgagagc tttattaata acctcggcaa ttttgtcgat
1861 actcgtgcct ttgtcgcccg gataacctcc accaaggtcc aagaggtacg gcttgaaacc
1921 gagatcggtg gccatgtcaa ataacatttt acaatgatga atagcgcgat aaaacaccgg
1981 tggatcttga catccggaac caacgtgaaa gctaaagccg actacgttaa gattcaatgt
2041 atatgcaaga tgtaaaagat taggagcctc gtggatcgga tcacagccaa atttcatgcc
2101 aagcggacac tgggccgttt ccgcatcgca acgaattcgt aaaacaacct tggccgtcgg
2161 aaaaaatttt ttaattttgt acaactcgct ttcgttatct gccgtcatgg tatccactct
2221 cattgcagca gcatgacgaa tatgtgaagc tggtttagcc ggattagcaa aaataattct
2281 tgaagagtct acaccaaggc ttaacacttt gtttatctca ttcttagatg cgcaatcaaa
2341 accgacaccg agagccgcta atacctcgat tactatcaaa ttatcgttac acttcacagc
2401 ataatagggc ttgactcgtg gcaatttttt ttcccaaatt tgatgctttt gtacaatatc
2461 tcctacatcc aatacgtaga aagcttcttc ttgtaaacca ctcattgcga tatttttgat
2521 aacagtcata gcgttggact cgctatccaa cacatggatg cgttcatcca gatttgttac
2581 cttcatattg attgagtttt gtaaattaat cagtactctg taggtgctag gcagcaaaga
2641 ggcagctgtc aatgctaatt gggtgggtcg tgaggaagcg gattaagacc agatcactgt
2701 gggggtgcta gcaaagccac gggggctctg cattcagggc caacttccag ttgccgcagt
2761 tattcaagca cccaccagca gactggccga ccagcctatc gcagatagaa cccttatcga
2821 gcgatcgcca ccctgcgggt cggcacacgg ttattgacgg aatgatggaa gttttcggtg
2881 accggatcac aaaaatcagt cagatcggtc gacgaggtac gggctgtcgt tcgcggcgac
2941 cagtgctcgt cgtcgagttc tcggtactcc gtacgacctc gcgtcgggga aaggacattc
3001 gtttcggccg gtttaacgcg ttacgtgcga gcgccgtaac gtcgtcgaag tcgtcgtcga
3061 tcgcgatatt tcaagaaata tcgtgtaacc gcgctcgtcg ttatagatct cgtttccgag
3121 atcgtggaga agaaggggtg ccgcgagacg acgcacacgt acacggagat gatttttcgt
3181 acaccgccaa cacgccaccg caccgccagc cgtgcgcgct cgaaaaggg
//