LOCUS LC493088 7537 bp RNA linear VRL 26-JUL-2019 DEFINITION Sapelovirus A XTND/2018 genomic RNA, complete genome. ACCESSION LC493088 VERSION LC493088.1 KEYWORDS . SOURCE Sapelovirus A ORGANISM Sapelovirus A Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Sapelovirus. REFERENCE 1 (bases 1 to 7537) AUTHORS Kokuho,T., Kato,T., Nishi,T., Tran,T.H., Dang,V.H. and Miyazawa,K. TITLE Direct Submission JOURNAL Submitted (18-JUL-2019) to the DDBJ/EMBL/GenBank databases. Contact:Takehiro Kokuho National Agriculture and food Research Organization, National Institute of Animal Health; 6-20-1 Josuihoncho, Kodaira, Tokyo 187-0022, Japan URL :http://www.naro.affrc.go.jp/laboratory/niah/ REFERENCE 2 AUTHORS Kokuho,T., Kato,T., Nishi,T., Tran,T.H., Dang,V.H. and Miyazawa,K. TITLE Sapelovirus A XTND/2018 RNA, complete genome JOURNAL Unpublished (2019) COMMENT FEATURES Location/Qualifiers source 1..7537 /collection_date="2018" /country="Viet Nam" /db_xref="taxon:686984" /host="Sus scrofa domesticus" /mol_type="genomic RNA" /organism="Sapelovirus A" /strain="XTND/2018" CDS 445..7416 /codon_start=1 /product="polyprotein" /protein_id="BBM63354.1" /transl_table=1 /translation="MESTTTLSFCNWIPKKQRARVYLTTSVTHEKSIGPYTYVVSDMI MKENSRTSLAMAYVEGKTLVFNTGTQLGQVHSANTGNKPQGAYNHGSGSITQINYYGS DYSQAWNPTQQQMDPSQFTKPVTEIANAVAGPSLKAPDKEEEGYSDRLMQLTAGNSCI TTQEAAKAVVAYGQWPSYNIDGGEHLDLATTPGTAVDRFYTFDSLQWGNTQIGEWSLP LPGGLMDTGVFGQNLRFHYLSRMGFCVHVQCNASKFHQGALIVAMIPEHQTPTQVPNG FAYRDGVNYQGNNYPTEQLTVFPHQIINLRTNNSATIVYPYTNCTPAGFGLAHNFVTL VIRVLVPLRYNEGASTFVPITVSVAPMCSMFAGLRSSVTRQGFPVRQVPGSQQFMTTQ RDSGIPIYPEFEKTHGFKLPGRVTNLLQVAQVGTFLKFRNNVNDTSGVYLNLDVTQGN QTNRIAAIDVSMISTHLVTTYLSRLAQMYANYRGSVVFEFMFCGSQMATGKLLIAYTP PGGSSPTTRTDAMLATHVIWDIGLQSTCKLVVPYISSSQFRQNNVNQTVLSYNGWVTV FQQTALVVPPGAPSTCQLVVTVSAADNFVLRIPTDTTYFADYQGDVKDEVQASINRVL QNALNTAPQQEQSSNGIMVNQGNAPALTAAESGESDTNSGGSTMELQATNCVFSLRET DLEYLMSRYSLMFEDKLDYTDGNGKRHLRYNVDFRTIGMSSSDITKFRAFTYWRFDLD VVVMVLEDKPAAVKNLMFQVLYTPHGGVVPQRHNSRVWNAPNSTSVYTRVGDCPASFR IPFMSVCNYYTSFYDGDGNFDKNGAAYGVNPGNFIGVIAVRLANDIITNEVSGSFRVK IFLRPVNIEAYMPRPLIAYKANGDAVQDSSRYYPAEQLGPYEICQTRNASELIDTKWA KYSCSVKFDRGSFTAWFVGEDLLLVPYHAANNWSQTTHVFLWRAWDKNWRDHPELEMK IPIVDMWTDSTRDLTFLKIAYATPYWLEMPTRGSAIGDYIVVVNSAHFPWKQYSGPKP FRHPYLHIGQHTQYRLWMHAGDADNGFCGAGLISRGKLYGIVTARTEAKSGGTFVAYT ELDEDTFLQTQQRCFDFGMDSHFNLGMHDWVQGLGQVFGEGVSGEVKRQVEDYLGQIK PIIDAGTNKVKDVIKDEMVSASMSLLVKVVASLVLYMNSKDDCKMSTLASLGALLGVD IFLTDPIMYLYSKITGEPHKQGPSEWLKEFNIAINAFKGFDFLCSKLMQLIEWIKQFF QRVEPEYKYFKELLESWPKVCAKVLEFKNCKTTLGQEDICQIKMYIDKLIELGNKYGH KFNLQMSQLLQCSNIINKAYSNMTRSRHEPVAMLIHGAPGTGKSLATEIIGRAIADKL DNQRPYTLPPDPKHFDGYNQQKVVIMDDLGQNPDGEDCKMFCQMVSTTTYIPPMASLD EKGLPFISDFVLASTNQHALTPRTIAEPDAINRRWFMNVDIHLKKEFKDDRGRLDMSK CIPCKDCKPINFRKCNPLVCGKAIILLDRKTQKNWTVDSAVTHLLEESERRKGFLNVV DAIFQGPVQVPECVREDEVKKKRVNSERDIPHDVMELVRCTKSPVIIDELEKAGFIIP VEAEVIRQTNNVNNVTQIVSATLASLAAIISVGTVVYLMVRLFSSKQGAYTGAPKPET RKPVLRKAVVQGPDMEFAKSIMRSNLCQVTTSVGPFTGLGIYDNILVLPRHAYVSGNI VLDGVDIPVVDAVELEAEEGNLELVQLTLKRNEKFRDIRKFLSNGFHSENDCWLCINS EMFSNVYIPLKSVSAFGFLNLSMTPTYRTLVYNYPTKMGQCGGVVLKAGKILGIHIGG DGTRGFAALLKRDYFVNKQGLITEKYTPSKPVNVRTKTAFHPSVFHDVFPGSKEPAAM SVNDPRLEVDLEEAIFAKYKGNVDTTLPEEALIAIDHLVSKFKAIVPDNLCEKMSLED VVYGTENLDGLDLTTSAGYPYNTMGIRKKDLIPPKGQSLSPLIKALDLYGYDLPFTTY LKDELRPKEKVKMGKTRVIECSSLNDTIMMKQTFGHLFQTCHKNPGTYTGVAVGCNPD VDWSKFAAEIGDAYVCAFDYTNWDASLSPLWFDALKLFLSKLGYSGRDLVLIDQLCYS NHIYKNKGYKVTGGMPSGCSGTSIFNSIINNIVIRTMIMLAYKNINLDELLVLCYGDD LLVAYPYELDPNVLVPLAKSYGLTITPADKSTTFQTGTKLTDVTFLKRGFKFDDEYPF LCHPVFPMEEVHESIRWTKNASYTQEHVTSLCLLAWHNGEEVYEEFCTKIRSVPVGRA LILPPYFQLRRSWLDMF" BASE COUNT 2343 a 1363 c 1661 g 2170 t ORIGIN 1 ccacactcat ttcccccctc cacccttaag gtggttgtat ccccataccc taccctccct 61 tccaaagcgg atggataaat ggacttgacc tcacggcgag tacaaatggt atgattttgg 121 atgcacctta atggtagtag cgtggcgagc tatggaaaaa tcgcaattgt cgatagccat 181 gttagtgacg tgcttcggcg tgctcctttg gtgattcggc gactggttac aggagagtag 241 gcagtgagct atgggcaaac ctctacagta ttacttagag ggaatgtgca attgagactt 301 gacgagcgtc tctttgagat gtggcgcatg ctcttggcat taccatagtg agcttccagg 361 ttgggaaacc tggactgggc ctatactacc tgatagggtc gcggctggcc gcctgtaact 421 agtatagtca gttgaaaccc ccccatggaa tctactacta ctctttcatt ttgcaactgg 481 atccccaaga agcagagagc ccgtgtgtac cttaccacca gtgtgacaca cgagaaatca 541 attggaccct acacctatgt agtatctgac atgatcatga aagaaaacag tagaacctcc 601 cttgccatgg catacgtgga agggaagacg ctggtgttca acactggtac acaattagga 661 caagttcact cagctaacac tggtaataaa ccccagggtg cttacaacca tggctctggg 721 agtatcacac aaatcaacta ctatggttct gactactctc aagcatggaa tcccacacaa 781 cagcaaatgg acccctccca atttactaaa ccagtcacag aaatagctaa tgcagtggca 841 gggccatcac tgaaggcacc tgacaaagaa gaagaaggat atagtgatag gttgatgcag 901 ttgacagctg gaaattcatg tataacaaca caggaagctg caaaagctgt tgtggcctat 961 ggacaatggc ctagttacaa tattgatggt ggagaacatc tagaccttgc cacaacccca 1021 gggactgctg ttgacagatt ttataccttt gatagtttac aatggggaaa tacccaaatt 1081 ggtgaatggt cattaccctt accaggtgga ctaatggaca ctggtgtatt tggacaaaat 1141 ttaagatttc actatttgtc aaggatggga ttttgtgtac atgtgcaatg taatgcgtct 1201 aagttccacc aaggtgcact catagttgca atgatacccg aacaccaaac acccacccaa 1261 gtacccaatg ggtttgcata tagagatggt gtgaactacc agggaaacaa ttaccccacc 1321 gagcaattga ctgttttccc acaccagatt ataaatttga gaactaacaa ttctgccaca 1381 atagtttacc catacactaa ttgcacacca gctggttttg gtctggcaca caattttgtt 1441 acattggtta ttagagtttt agtacccctt agatataatg aaggagcttc aacctttgtc 1501 cccataacag tcagtgtagc cccaatgtgt tccatgtttg ctggtttaag atcatcagta 1561 acaagacaag gcttcccagt caggcaagta ccaggtagtc aacagtttat gacaacacag 1621 agagatagtg gcatacccat atacccagaa tttgagaaaa cacatgggtt taaactgcct 1681 ggtagagtaa ccaacttgct ccaggtggct caggtgggaa cattcctaaa atttagaaac 1741 aatgttaatg atacaagtgg tgtgtatttg aacttggatg tgacacaggg taatcaaaca 1801 aatagaatag cagctattga tgttagcatg atatccacac atttagttac aacctacctg 1861 tcccgattgg cacagatgta tgcaaattat agggggtctg ttgtctttga atttatgttt 1921 tgtggtagcc agatggccac agggaaatta ctcattgcct atacacctcc tggtggatct 1981 tccccgacaa cacgcactga tgcaatgcta gcgactcatg tgatttggga tatagggtta 2041 cagtctacat gtaaacttgt ggttccttat atatcttctt cccaatttag acagaataat 2101 gttaatcaaa ctgtactatc atacaatggg tgggtgactg tgtttcaaca aacagcgctc 2161 gtggtacccc caggagcacc atcaacgtgc cagttggtgg ttactgttag cgcagcagac 2221 aactttgtgt tgaggatccc tactgatact acctattttg cagattacca gggagatgtt 2281 aaagatgagg tacaagccag cataaacaga gttctgcaga atgcattaaa cacagcaccc 2341 caacaggagc aatcctcaaa tggcattatg gtgaatcagg gaaatgcacc tgcacttaca 2401 gcagcagaat ctggagagtc tgatacaaac tcagggggat ccacaatgga actacaagca 2461 acaaattgtg tgtttagttt aagagaaaca gatttagaat atttgatgtc taggtattcc 2521 cttatgtttg aagataaact ggattatact gatggtaatg gcaaaagaca tcttagatat 2581 aatgtagatt ttaggacaat aggtatgtca agtagtgata ttaccaagtt tagagctttt 2641 acatattgga gatttgattt agatgtagta gttatggtgc tagaagataa accagctgct 2701 gttaagaatt tgatgtttca ggtattgtac acccctcatg gaggagttgt gccgcaaaga 2761 cacaactcac gagtgtggaa tgcacccaat tcgactagtg tgtacacaag agtgggggat 2821 tgtccagctt cttttagaat accctttatg tcagtgtgca actattatac atccttttat 2881 gatggtgatg gtaattttga taagaatggt gccgcctatg gtgtcaatcc aggtaatttt 2941 ataggtgtga ttgctgttag gttagctaat gatattatta ccaatgaagt tagtggttcc 3001 tttagagtta agatttttct taggcctgtg aatattgaag cctatatgcc tagacctctt 3061 attgcatata aagctaatgg tgatgctgta caggatagtt caagatatta cccagcagaa 3121 caattaggcc catatgaaat ttgtcaaacc agaaatgcct cagagttaat tgatacaaag 3181 tgggccaaat attcctgttc agttaaattt gatagaggtt cttttacagc ctggtttgtg 3241 ggagaagacc tactactggt accctaccat gctgctaata attggagtca gacaacacat 3301 gttttcctct ggagggcttg ggacaagaat tggcgtgatc atcctgagtt agagatgaaa 3361 ataccaattg tagacatgtg gacagattca acaagagatt tgacatttct taaaattgcc 3421 tatgccactc catattggct tgaaatgcca actagagggt ctgccattgg agactacata 3481 gtagttgtta attcagccca tttcccctgg aaacagtatt caggtccaaa accatttaga 3541 cacccctatt tacatattgg acaacacact cagtataggt tatggatgca tgctggtgat 3601 gccgacaatg gtttctgtgg agccggttta atatctagag gtaaacttta tggtatagtt 3661 acagcaagga cagaagctaa atcaggaggt acatttgtag cttacactga gcttgatgaa 3721 gacacctttt tacaaacaca acaaagatgt tttgattttg gaatggattc acactttaat 3781 ttaggaatgc atgattgggt tcaaggactt ggtcaagtgt ttggagaagg tgtttctggc 3841 gaggtgaaga gacaagtgga agactattta ggtcagatta aacctatcat agatgcaggt 3901 acaaataaag ttaaagatgt gattaaagat gaaatggtga gtgccagcat gtctttatta 3961 gttaaggtag tagcctcttt agtactttat atgaattcca aggatgattg taagatgtct 4021 actttagctt cattaggtgc tttgttaggt gtagatatat ttttaactga tcctataatg 4081 tatttatata gtaagataac tggagaacca cataaacaag gaccttctga gtggcttaaa 4141 gaatttaata tagccataaa tgcatttaaa ggatttgact ttctttgctc caaactgatg 4201 caattaattg agtggattaa acaatttttc cagagagttg aaccagagta caagtatttt 4261 aaagaattac ttgaatcatg gcccaaggtt tgtgccaagg ttctggagtt taagaattgc 4321 aaaacaacat tgggtcaaga agatatatgc cagattaaga tgtatattga taaattgatt 4381 gaattaggta acaaatatgg ccacaaattt aacttacaaa tgtctcagtt actgcaatgt 4441 tcaaacataa taaataaagc ttacagtaac atgacaagat ctagacatga accagtagca 4501 atgcttatac atggtgctcc aggtactggc aaatcactag ctactgaaat aattggtagg 4561 gcaatagctg ataagttaga caatcagagg ccttataccc ttccccctga tccaaaacat 4621 tttgatggtt ataatcaaca gaaggtagtt ataatggatg atttaggaca gaacccagat 4681 ggtgaagatt gtaaaatgtt ttgtcagatg gtttccacta ccacttatat tccacctatg 4741 gcatcccttg atgaaaaagg attacccttt atttctgatt ttgtattggc ttctactaac 4801 caacatgcat tgacccctcg caccattgct gaaccagatg caataaatag gaggtggttc 4861 atgaatgtgg atatccacct caagaaagaa tttaaggatg atagaggaag attggacatg 4921 tcaaagtgca taccttgtaa ggactgtaaa ccaattaact tcaggaaatg caacccatta 4981 gtatgtggta aagcaatcat tttattggat aggaaaaccc aaaagaattg gactgttgac 5041 tcagcagtta cacacctgct tgaagagtca gaaaggagaa aaggtttcct gaacgtggtt 5101 gatgcaatct ttcaaggccc agtacaagta cctgagtgtg ttagagagga tgaggtgaaa 5161 aagaagagag tgaactcaga aagagacatc ccacatgatg tgatggagct ggttcggtgc 5221 acaaagtccc ctgttataat agatgagtta gagaaggctg gctttattat tcctgtggaa 5281 gctgaagtga tacgccagac caataatgta aataatgtaa ctcaaattgt ttcagcaact 5341 cttgctagtt tagctgctat aatttcagta ggtactgtag tttacttaat ggttaggttg 5401 ttttcctcta agcaaggagc gtatactggt gcacctaagc cagagaccag gaaacctgta 5461 cttaggaaag cagtggtgca gggacctgac atggaatttg ctaagtccat catgagatca 5521 aacttgtgcc aggttaccac tagtgtggga cctttcactg gactgggcat ttatgacaac 5581 atcctggtgc taccaaggca tgcttatgtt agtggaaaca tagtgttaga tggtgtagat 5641 attcctgttg tagatgctgt agagttagag gctgaagaag ggaatttaga gttggtacag 5701 ttaaccctta agagaaatga aaagtttagg gatattagaa agtttttaag caatggattt 5761 catagtgaaa atgattgttg gctgtgtatt aattctgaaa tgttttctaa tgtatatatc 5821 cctcttaaga gtgtttctgc ttttgggttt ctcaaccttt ccatgacccc aacctacagg 5881 acccttgttt ataattaccc cactaaaatg gggcaatgtg gaggtgtagt gctgaaggca 5941 ggaaagattt tgggcattca cattggtggt gatggtacca gagggtttgc agctctgctg 6001 aagagagatt actttgttaa caaacaagga ttgataacag agaagtacac accatcaaaa 6061 cctgttaatg tgagaacaaa gacagcattc cacccatcag tgttccatga tgtttttcct 6121 ggaagcaagg agcccgctgc aatgagcgtg aacgatccaa gactggaggt agatttggaa 6181 gaagcaatat ttgcaaagta caaaggtaat gtggatacta cactcccaga agaagctctc 6241 attgcaatag atcacctggt ttctaaattt aaagcaatcg taccagacaa cctgtgtgag 6301 aagatgtcat tggaagatgt tgtctatggt actgagaatt tggatggatt agatttaacc 6361 acatcagcag ggtatcctta taacaccatg ggaattagaa agaaagacct tattcctcct 6421 aagggacagt ctttatcccc tcttataaaa gccttagatc tttatggtta tgatttacct 6481 tttactactt atttgaagga tgaacttaga ccaaaagaga aagtgaaaat gggcaaaacc 6541 cgggtcattg aatgttcatc actcaatgac accataatga tgaagcagac ttttggtcat 6601 ctgttccaaa catgtcataa gaaccctggg acctacactg gtgtagccgt tggctgcaat 6661 ccagatgtgg attggtcaaa gtttgctgct gaaataggtg atgcctatgt atgtgctttt 6721 gattatacta attgggatgc tagtttgtca cctttgtggt ttgatgcttt aaaattgttt 6781 ttgtctaaac taggttatag tggtagggat ttagttttga ttgatcagtt gtgttattca 6841 aatcacatat ataagaataa gggttataaa gtgactggtg gtatgccatc gggctgctcc 6901 ggcactagta tttttaatag cattattaat aatatagtta ttaggaccat gataatgtta 6961 gcatataaga atataaattt agatgagttg ttagttttat gttatggtga tgatttattg 7021 gttgcctatc cctatgaatt ggatcctaat gtgctggtac cattggcaaa gagttatgga 7081 ttgaccataa caccagcaga caaatcaaca acttttcaaa caggaacaaa gttaacagat 7141 gtaacattcc tgaagagggg tttcaaattt gatgacgaat accccttcct gtgtcatcct 7201 gtatttccca tggaggaagt acatgaatca attagatgga ccaagaatgc cagctacact 7261 caagaacatg ttacctcgct gtgtttattg gcatggcaca atggtgagga ggtttatgaa 7321 gagttctgta caaagatcag atcagttcca gtaggcaggg ctcttatatt acccccttac 7381 tttcagctgc gtaggtcttg gttagatatg ttttaggcgg cgtgagcata tcagtgatac 7441 aggattaata attaggctaa ttggcaatag accctaagcc gcctataggg tctacaaaaa 7501 aaaaaagaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa //