LOCUS LC382449 3332 bp RNA linear VRL 03-MAY-2018
DEFINITION Prunus necrotic ringspot virus Acot genomic RNA, segment RNA1,
complete sequence.
ACCESSION LC382449
VERSION LC382449.1
KEYWORDS .
SOURCE Prunus necrotic ringspot virus
ORGANISM Prunus necrotic ringspot virus
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
Martellivirales; Bromoviridae; Ilarvirus.
REFERENCE 1 (bases 1 to 3332)
AUTHORS Noorani,M.S. and Khan,J.A.
TITLE Direct Submission
JOURNAL Submitted (29-APR-2018) to the DDBJ/EMBL/GenBank databases.
Contact:Md Salik Noorani
Jamia Millia Islamia, Department of Biosciences; Maulana Mohammad
Ali Jauhar Marg, Jamia Naga, New delhi, Delhi 110025, India
REFERENCE 2
AUTHORS Noorani,M.S. and Khan,J.A.
TITLE Complete genome organization of PNRSV infection apricot in India
JOURNAL Unpublished (2018)
COMMENT
FEATURES Location/Qualifiers
source 1..3332
/collected_by="Md Salik Noorani"
/collection_date="2015-05-17"
/country="India"
/db_xref="taxon:37733"
/host="Prunus armeniaca"
/isolate="Acot"
/isolation_source="apricot leaf"
/mol_type="genomic RNA"
/organism="Prunus necrotic ringspot virus"
/segment="RNA1"
CDS 30..3167
/codon_start=1
/product="replicase P1"
/protein_id="BBD96251.1"
/transl_table=1
/translation="MDPESLSQLLVSTLQKQCADETSTVGKVFSERGVALVERSIPKA
EGERLNISFALSAEQKSLLSRNFPGRDIHFAQRDSSSHSFAAAHRLLETDYIYKCFGT
TEEAVIDLGGNFVSHIKQKRYNVHSCCPLLDDRDGARFTERLISLKTYLRTHKEERHE
ADYCECRFEECPRRADYVMAVHAVSDLPITDLCAALTKKGTKKMILSIMMDPNMLLRD
VGEIPNFNVRWEIDRTEDIIRFDFIDAPCLGYQHKFSVLQQYLTTNAVIVGDKAAYRV
ERKSDFGGVFIVDITAVAGYKPGMVVGGTRSCAWSTLIRNKTVVHTVDGEDHWWYDVT
RRSKILVDTKVLTKVLEASFRQFKPNVEPESMIQNIATMLSSSTNYTVINGVTLQAGE
SLPYGDYVAIAPTIYVRTKRMYDSIRTNIDRLNETRSVPIKDVAQGEVYGKLGNALGS
LFAPTATTQVIAGPKGREDVYELHPKSWSDEVRNFFYCCVGRQGVGHTLLSDPDLFVP
LEVVLQAKWTGGSVLTVKTLFDDVVKPEYDRVEEELQRVRDDRDKSEKLQKAILTVAK
WIEAHPDGKLPKGLGEVAALVPDMVDLRESVVAVEPKAVVNKYASEIQEAITYFELEA
DISAKKLRSVGEHCNWSKKFISTIWAGDESRRVYIPQTDSWLGPPNVPKPEPTGQYER
GMTADGYVLMAWSGSSGQKFDGPLQVDAVCRRELSRYPAIFFDKSCEFAANLRLLPAL
REALTVEAKFTRKLMDGVAGCGKTTKILNECKMCNDQPDLVLTSNRSSAMELREKLPG
SQLLRSTRVRTSDSYLMNPKRPSSVRVIFDECFLQHAGCVYAAASLAGAEELVLFGDT
KQIPFVSRIPHFRLKDHLVSADEKVMSNLTYRCPADATMALSKWFYRRNVKTANTTLR
SMSVKPIVSVSQIDRNFDLYMTHTQAEKHTLIASGVVPRDKVFTSAEAQGKTEGRAAL
VRLSRTSMSLFTGKDPLMGPCHSLVALSRFKRQFVYFTVADTDSDDLIAKAIRDVSNS
SDDAVSSYIHRDHKI"
BASE COUNT 903 a 641 c 879 g 909 t
ORIGIN
1 gtttttagtt cgtggttgaa ctatttatca tggatccaga atctctatca cagttgcttg
61 tttctacctt acagaaacaa tgcgctgatg aaacctcgac agtggggaag gtattctccg
121 agagaggtgt agctctggtt gagcgatcta ttccgaaggc cgaaggtgaa cgacttaata
181 taagttttgc cctgagtgcc gagcagaagt cattgttgtc tcgaaatttt cccggtagag
241 acatacattt tgcacaacga gactcttcga gtcatagttt tgcagcagct cataggttgt
301 tagaaaccga ttatatttat aagtgcttcg gcacgactga agaggcggtg attgatcttg
361 ggggaaattt cgtttctcac ataaagcaga aaaggtataa tgtgcatagc tgttgtccgc
421 ttctagatga ccgcgatggt gccagattta ccgaacgttt gatctcattg aagacctact
481 tgcgaactca caaggaggaa agacatgagg cagactattg cgaatgccgc ttcgaggagt
541 gcccgagacg ggccgactat gtgatggccg tgcacgctgt tagcgacttg cctatcacag
601 atctttgtgc tgcattgact aagaaaggga caaagaagat gattttgtcc ataatgatgg
661 atccgaatat gttgttgagg gacgttggtg aaataccgaa cttcaacgtt cgttgggaga
721 tagacagaac cgaggatatc ataaggttcg attttatcga tgccccgtgt ttgggatacc
781 aacacaagtt ttctgtatta cagcaatatc tcaccacgaa tgctgttata gtgggagata
841 aagcagctta tcgcgttgag cgaaaaagcg atttcggcgg tgtattcatt gttgatataa
901 cggccgttgc tgggtacaag ccgggtatgg tagtgggtgg tactagatct tgcgcgtggt
961 ctactctaat ccgaaacaaa accgttgttc atactgtcga cggtgaggat cattggtggt
1021 atgatgttac tcgcagatcg aagatccttg tggacactaa ggtattgacg aaagtgttgg
1081 aagcaagttt ccgtcaattc aaaccgaatg tggaacctga gtcaatgatt cagaacatcg
1141 cgacgatgtt gtcttcttcg acgaattaca ctgtgattaa cggtgttaca ctccaagcag
1201 gtgagagtct accttatggc gattatgtag ccatagcccc cactatttac gtgaggacca
1261 agaggatgta tgattcgata agaaccaata tcgatagatt aaacgaaacc cgatcagtcc
1321 cgataaagga cgtagcacag ggtgaagttt acggtaagtt gggtaatgct ttaggcagtt
1381 tgtttgcgcc gactgcgact acccaagtta ttgcaggtcc gaaaggtaga gaggatgttt
1441 atgagttgca tccgaagtct tggtctgacg aagttagaaa tttcttctat tgttgtgttg
1501 gtagacaagg agtcggacat actttactga gcgacccgga tttgttcgta ccactcgaag
1561 ttgttttaca ggccaagtgg actggtggtt cggtcttgac tgtaaaaact ctgtttgacg
1621 atgtagtcaa accagaatac gatagagtgg aagaggaact ccagcgcgtg cgagatgaca
1681 gagataagtc agagaaacta cagaaagcga tcttgaccgt cgcgaagtgg atagaagccc
1741 atcccgatgg aaagttaccc aagggtttag gcgaggtagc agcgctagtt ccagatatgg
1801 tagatttgcg tgagtccgtc gtagctgtcg aaccaaaggc cgttgtgaat aagtatgcat
1861 ctgaaattca agaagctatt acttatttcg agctagaagc tgacatttcc gcgaagaaat
1921 tgaggtctgt gggtgaacac tgtaattggt caaagaaatt catttcgact atttgggcgg
1981 gcgatgagtc ccggcgtgtg tatattccac agaccgacag ttggttagga ccacccaatg
2041 ttccgaaacc agaaccgact ggtcaatacg aaaggggaat gactgctgat gggtatgtgc
2101 tcatggcctg gagtggttcc agtggtcaaa aatttgacgg tccattacaa gtcgacgctg
2161 tgtgtcgtag agaattgtcg cgctaccccg cgatattttt cgataaatcg tgcgagttcg
2221 ccgccaactt aaggttgtta ccggcattac gagaggcact cactgtagag gcgaagttta
2281 cacggaagtt gatggatggc gtagctggat gtggaaaaac cacgaagatc ctcaacgaat
2341 gtaagatgtg taacgatcag cctgatcttg ttttgactag caacaggtcc tcggcgatgg
2401 agctgaggga gaaactacca ggtagtcaat tattacgatc cactcgggtt aggacgtcag
2461 actcatattt gatgaatccg aagagacctt catcggttcg agtgattttt gacgagtgtt
2521 tcttacaaca cgctggttgc gtttacgcgg ctgctagtct agcaggagct gaggagttag
2581 tattgtttgg tgatacgaaa caaattccct ttgtatcaag gattcctcac ttccgattaa
2641 aggaccattt agtgtcggct gacgaaaagg tgatgtcgaa tttgacttac cgatgtcctg
2701 ctgacgccac tatggctctt tcgaaatggt tttaccgaag gaacgtgaag acagcaaaca
2761 ccacacttag gagtatgagt gttaagccga ttgtgtctgt tagtcaaatc gaccggaact
2821 ttgatttgta tatgacgcat acacaggcgg agaaacacac actgatagcc agtggtgtag
2881 ttccgagaga taaggttttc acttcagctg aggcacaagg gaaaaccgag ggtagagccg
2941 cgctagttcg attgtcaaga actagtatga gtctgtttac tggtaaggac ccgttgatgg
3001 gtccttgtca tagtttggta gctctgtctc gatttaagag acagtttgtt tacttcactg
3061 tggctgatac ggattcagac gatttgattg ctaaggcaat cagagatgtt agtaacagta
3121 gtgacgatgc agttagtagt tacatacatc gagatcataa aatttagggt gagatgaaca
3181 cacccgattc ccagattatg gaagaaccgt accaccgtgt ggatttatcg gttatctctt
3241 ttgaagtcgt ttccttactt cagtgttctg agagattacc tgcgtttgca gatgcctaca
3301 acgagaagtc gtagatgccc gattagggaa gc
//