LOCUS       LC333864                 639 bp    DNA     linear   BCT 04-SEP-2018
DEFINITION  Pseudomonas lactis YT4 rpoD gene for RNA polymerase sigma factor,
            partial sequence.
ACCESSION   LC333864
VERSION     LC333864.1
KEYWORDS    .
SOURCE      Pseudomonas lactis
  ORGANISM  Pseudomonas lactis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Kashiwagi,A. and Toba,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-NOV-2017) to the DDBJ/EMBL/GenBank databases.
            Contact:Akiko Kashiwagi
            Hirosaki University, Faculty of Agriculture and Life Science; 3,
            Bunkyocho, Hirosaki, Aomori 036-8561, Japan
            URL    :http://nature.cc.hirosaki-u.ac.jp/english
REFERENCE   2  
  AUTHORS   Tanaka,C., Yamada,K., Takauchi,H., Inokuchi,Y., Kashiwagi,A. and
            Toba,T.
  TITLE     Characterization of a lytic bacteriophage for controlling
            Pseudomonas lactis in raw cow's milk
  JOURNAL   Appl. Environ. Microbiol. 84, e00111-18 (2018)
  REMARK    Publication Status: Online-Only
            DOI:10.1128/AEM.00111-18
COMMENT     
FEATURES             Location/Qualifiers
     source          1..639
                     /collected_by="Takahiro Toba"
                     /country="Japan:Aomori"
                     /db_xref="taxon:1615674"
                     /isolation_source="raw cow's milk"
                     /mol_type="genomic DNA"
                     /organism="Pseudomonas lactis"
                     /strain="YT4"
     CDS             <1..>639
                     /codon_start=1
                     /gene="rpoD"
                     /product="RNA polymerase sigma factor"
                     /protein_id="BBB33709.1"
                     /transl_table=11
                     /translation="IAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAA
                     EVPPPVDAKAAKADDDSDDDEAESSDDEEEAESGPDPVIAAQRFGAVSDQMEITRKAL
                     KKHGRGNKQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVR
                     DARMPRTDFLRQFPGNEVDESWSDALAKGKAKYAEAIGRLQPDIIRCQQKLTA"
BASE COUNT          139 a          199 c          194 g          107 t
ORIGIN      
        1 attgcgcact tccctggcac ggttgaccac attctctccg agtacactcg cgtcaccacc
       61 gaaggtggcc gcctgtctga cgtcctgagc ggttatatcg acccggacga cggcattgcg
      121 ccgcctgccg ccgaagtacc gccgcctgtt gatgcgaaag ccgcaaaagc ggacgacgac
      181 tccgacgacg acgaagctga aagcagcgac gacgaagaag aagccgaaag cggtccagac
      241 ccggtcatcg ctgcccagcg cttcggtgca gtttccgatc aaatggaaat cacccgcaag
      301 gccctgaaga agcacggtcg tggcaacaag caggcgattg ccgagctggt ggccctggct
      361 gagctgttca tgccgatcaa gctggtgccc aagcaattcg aaggcctggt tgagcgtgtt
      421 cgcagcgccc ttgagcgtct gcgtgcacaa gagcgtgcga tcatgcagct ctgtgtgcgt
      481 gatgcgcgca tgccgcgtac cgatttcctg cgccagttcc cgggcaacga agttgacgaa
      541 agctggagcg acgcactggc caagggcaag gcgaaatacg ccgaagccat cggtcgcctg
      601 cagcccgata tcatccgttg ccagcagaag ctgaccgcg
//