LOCUS       LC322003                1327 bp    mRNA    linear   BCT 22-SEP-2017
DEFINITION  Pseudomonas aeruginosa NUH-9Y oprD mRNA, complete sequence.
ACCESSION   LC322003
VERSION     LC322003.1
KEYWORDS    .
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 1327)
  AUTHORS   Hirabayashi,A. and Yagi,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2017) to the DDBJ/EMBL/GenBank databases.
            Contact:Aki Hirabayashi
            National Institute of Infectious Diseases, Antimicrobial
            Resistance Research Center; 4-2-1 Aobacho, Higashimurayamashi,
            Higashimurayama, Tokyo 189-0002, Japan
REFERENCE   2
  AUTHORS   Hirabayashi,A., Kato,D., Tomita,Y., Iguchi,M., Yamada,K.,
            Kouyama,Y., Morioka,H., Tetsuka,N. and Yagi,T.
  TITLE     Risk factors for and role of OprD protein in increasing minimal
            inhibitory concentrations of carbapenems in clinical isolates of
            Pseudomonas aeruginosa
  JOURNAL   J. Med. Microbiol. (2017) In press
COMMENT     
FEATURES             Location/Qualifiers
     source          1..1327
                     /collected_by="Nagoya University Hospital"
                     /collection_date="2013-01-22"
                     /country="Japan"
                     /db_xref="taxon:287"
                     /host="Homo sapiens"
                     /isolation_source="ascite"
                     /mol_type="mRNA"
                     /organism="Pseudomonas aeruginosa"
                     /strain="NUH-9Y"
     misc_feature    1..1327
                     /gene="oprD"
                     /inference="similar to DNA sequence (same
                     species):RefSeq:NC_002516.2"
                     /note="porin D; putative frameshift mutation"
BASE COUNT          276 a          463 c          372 g          216 t
ORIGIN      
        1 atgaaagtga tgaagtggag cgccattgca ctggcggttt ccgcaggtag cactcagttc
       61 gccgtggccg acgcattcgt cagcgatcag gccgaagcga aggggttcat cgaagacagc
      121 agcctgaacc tgctgctccg caactactat ttcaaccgtg acggcaagga aggtcggggt
      181 gatcgcgtcg attggaccca gggcttcctc accacctacg aatccggctt cactcaaggc
      241 accgtgggct tcggcgtcga tgccttcggc tacctgggcc tgaagctcga cggcacctcc
      301 gacaagaccg gcaccggcaa cctgccggtg atgaacgacg gcaagccgcg cgatgactac
      361 agccgcgccg gcggcgccgt gaaggtgcgc atctccaaga ccatgctgaa gtggggcgag
      421 atgcaaccga ccgccccggt cttcgccgct ggcggcagcc gcctgttccc gcagaccgcg
      481 accggcttcc agctgcagag cagcgaattc gaagggctcg acctcgaggc aggccacttc
      541 accgagggca aggagccgac caccgtcaaa tcgcgcggtg aactctacgc cacctacgcc
      601 ggccagacag ccaagagcgc cgacttcgct ggcggccgct acgcgatcac cgacaacctc
      661 agcgcctccc tctatggcgc agagctgaaa gacatctatc gccagtacta cctgaacacc
      721 aactacacca tcccgctggc ctccgatcaa tcgctgggct tcgacttcaa catctaccgc
      781 accaccgacg aaggcaagtc caaggctggc gacatcagca acaccacctg gtccctggcg
      841 ggcgcgtata ccctggacgc ccacaccttc accctggcct accagcaggt gcatggcgac
      901 gagccgttcg actacatcgg cttcggcggc aacggttccg gcgccggcgg cgactcgatc
      961 ttcctcgcca actccgtcca gtactccgac ttcaacggtc ctggcgagaa atcctggcag
     1021 gcccgctacg acctgaacct ggcctcctac ggcgttcctg gcctgacctt catgctgcgt
     1081 tacatcaatg gtaaggacat cgacggtacc aaggtcgatt ccagctcctc ctatgcaggc
     1141 ctgtacggcg aggatggcaa gcaccacgaa accaacctcg aagccaagta cgtggtccac
     1201 gtccggtccg gccaaggacc tgtcgttccg catccgccag gcctggcacc gtgccaacgc
     1261 cgaccagggc gaaggcgacc agaacgagtt ccgcctgatc gtcgactatc cgctgtcgat
     1321 cctgtaa
//