LOCUS LC322001 1327 bp mRNA linear BCT 22-SEP-2017 DEFINITION Pseudomonas aeruginosa NUH-7Y oprD mRNA, complete sequence. ACCESSION LC322001 VERSION LC322001.1 KEYWORDS . SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 1327) AUTHORS Hirabayashi,A. and Yagi,T. TITLE Direct Submission JOURNAL Submitted (12-SEP-2017) to the DDBJ/EMBL/GenBank databases. Contact:Aki Hirabayashi National Institute of Infectious Diseases, Antimicrobial Resistance Research Center; 4-2-1 Aobacho, Higashimurayamashi, Higashimurayama, Tokyo 189-0002, Japan REFERENCE 2 AUTHORS Hirabayashi,A., Kato,D., Tomita,Y., Iguchi,M., Yamada,K., Kouyama,Y., Morioka,H., Tetsuka,N. and Yagi,T. TITLE Risk factors for and role of OprD protein in increasing minimal inhibitory concentrations of carbapenems in clinical isolates of Pseudomonas aeruginosa JOURNAL J. Med. Microbiol. (2017) In press COMMENT FEATURES Location/Qualifiers source 1..1327 /collected_by="Nagoya University Hospital" /collection_date="2012-11-15" /country="Japan" /db_xref="taxon:287" /host="Homo sapiens" /isolation_source="sputum" /mol_type="mRNA" /organism="Pseudomonas aeruginosa" /strain="NUH-7Y" misc_feature 1..1327 /gene="oprD" /inference="similar to DNA sequence (same species):RefSeq:NC_002516.2" /note="porin D; putative frameshift mutation" BASE COUNT 275 a 463 c 373 g 216 t ORIGIN 1 atgaaagtga tgaagtggag cgccattgca ctggcggttt ccgcaggtag cactcagttc 61 gccgtggccg acgcattcgt cagcgatcag gccgaagcga aggggttcat cgaagacagc 121 agcctgaacc tgctgctccg caactactat ttcaaccgtg acggcaagga aggtcggggt 181 gatcgcgtcg attggaccca gggcttcctc accacctacg aatccggctt cactcaaggc 241 accgtgggct tcggcgtcga tgccttcggc tacctgggcc tgaagctcga cggcacctcc 301 gacaagaccg gcaccggcaa cctgccggtg atgaacgacg gcaagccgcg cgatgactac 361 agccgcgccg gcggcgccgt gaaggtgcgc atctccaaga ccatgctgaa gtggggcgag 421 atgcaaccga ccgccccggt cttcgccgct ggcggcagcc gcctgttccc gcagaccgcg 481 accggcttcc agctgcagag cagcgaattc gaagggctcg acctcgaggc aggccacttc 541 accgagggca aggagccgac caccgtcaaa tcgcgcggtg agctctacgc cacctacgcc 601 ggccagacag ccaagagcgc cgacttcgct ggcggccgct acgcgatcac cgacaacctc 661 agcgcctccc tctatggcgc agagctgaaa gacatctatc gccagtacta cctgaacacc 721 aactacacca tcccgctggc ctccgatcaa tcgctgggct tcgacttcaa catctaccgc 781 accaccgacg aaggcaagtc caaggctggc gacatcagca acaccacctg gtccctggcg 841 ggcgcgtata ccctggacgc ccacaccttc accctggcct accagcaggt gcatggcgac 901 gagccgttcg actacatcgg cttcggcggc aacggttccg gcgccggcgg cgactcgatc 961 ttcctcgcca actccgtcca gtactccgac ttcaacggtc ctggcgagaa atcctggcag 1021 gcccgctacg acctgaacct ggcctcctac ggcgttcctg gcctgacctt catgctgcgt 1081 tacatcaatg gtaaggacat cgacggtacc aaggtcgatt ccagctcctc ctatgcaggc 1141 ctgtacggcg aggatggcaa gcaccacgaa accaacctcg aagcccaagt acgtggtcca 1201 gtccggtccg gccaaggacc tgtcgttccg catccgccag gcctggcacc gtgccaacgc 1261 cgaccagggc gaaggcgacc agaacgagtt ccgcctgatc gtcgactatc cgctgtcgat 1321 cctgtaa //