LOCUS LC269861 1095 bp RNA linear VRL 09-NOV-2017 DEFINITION Human immunodeficiency virus 1 pol gene for pol protein, partial cds, isolate: 09GH.NJ03. ACCESSION LC269861 VERSION LC269861.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1095) AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K. TITLE Direct Submission JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Nicholas Israel Nii-Trebi University of Ghana School of Biomedical and Allied Health Sciences, Medical Laboratory Sciences; Accra, Ghana URL :http://chs.ug.edu.gh/ REFERENCE 2 AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S., Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and Ampofo,W.K. TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance among treatment-experienced adults in northern Ghana JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017) REMARK DOI:10.1099/jmm.0.000621 COMMENT FEATURES Location/Qualifiers source 1..1095 /collection_date="2009-02-20" /country="Ghana:Tamale" /db_xref="taxon:11676" /host="Homo sapiens subject #NJ03" /isolate="09GH.NJ03" /isolation_source="plasma" /mol_type="genomic RNA" /organism="Human immunodeficiency virus 1" CDS <1..>1095 /codon_start=1 /gene="pol" /product="pol protein" /protein_id="BBA66828.1" /transl_table=1 /translation="PQITLWQRPVVTVRVGEQLIEALLDTGADDTVLEEINLPGKWKP KMIGGIGGFIKVRQYDQILMEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIF AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP LDKEFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTSNPE IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNW" BASE COUNT 436 a 175 c 227 g 257 t ORIGIN 1 cctcaaatca ctctttggca acgaccagta gtcacagtaa gagtagggga acagctaata 61 gaagccctat tagatacagg agcagatgat acagtattag aagaaataaa tttaccagga 121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat 181 cagatactta tggaaatttg tggaaaaagg gctataggta cagtattagt aggacctaca 241 cctgtcaaca taattgggcg aaacatgttg actcagattg gttgtacttt aaatttccca 301 attagtccta ttgaaactgt gccagtaaag ctaaaaccag gaatggatgg cccaaaggtt 361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagagatg 421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaacc catacaatac tccaatattt 481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat 541 aagagaactc aagacttctg ggaggtccaa ttaggaatac ctcatcctgc aggattaaaa 601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat 661 aaagaattta gaaagtacac agctttcact atacctagtc taaataatga aacaccaggg 721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatctttcag 781 gcaagtatga caaagatctt agagcccttt agaacaagca atccagaaat agtgatctac 841 caatatatgg atgatttata tgtaggatca gacttagaga tagggcaaca tagagcaaaa 901 atagaggagt tgagagaaca tttattgaaa tggggattta ccacaccaga caaaaaacat 961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa gtggacagtc 1021 caacctatac agctgccaga aaaagacagc tggactgtca atgatataca gaaattagtg 1081 ggaaaactaa attgg //
LOCUS LC269862 1095 bp RNA linear VRL 09-NOV-2017 DEFINITION Human immunodeficiency virus 1 pol gene for truncated pol protein, partial cds, isolate: 09GH.NJ34. ACCESSION LC269862 VERSION LC269862.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1095) AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K. TITLE Direct Submission JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Nicholas Israel Nii-Trebi University of Ghana School of Biomedical and Allied Health Sciences, Medical Laboratory Sciences; Accra, Ghana URL :http://chs.ug.edu.gh/ REFERENCE 2 AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S., Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and Ampofo,W.K. TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance among treatment-experienced adults in northern Ghana JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017) REMARK DOI:10.1099/jmm.0.000621 COMMENT FEATURES Location/Qualifiers source 1..1095 /collection_date="2009-02-20" /country="Ghana:Tamale" /db_xref="taxon:11676" /host="Homo sapiens subject #NJ34" /isolate="09GH.NJ34" /isolation_source="plasma" /mol_type="genomic RNA" /organism="Human immunodeficiency virus 1" CDS <1..126 /codon_start=1 /gene="pol" /note="Truncated pol protein due to a premature stop codon" /product="truncated pol protein" /protein_id="BBA66829.1" /transl_table=1 /translation="PQITLWQRPVISVRIEGKLIEALLDTXADDTVLEEINLPGK" BASE COUNT 433 a 169 c 224 g 259 t ORIGIN 1 cctcaaatca ctctttggca acgaccagta atctcagtaa gaatagaggg aaagctaata 61 gaagccctat tagacacagr agcagatgat acagtattag aagaaataaa tttaccagga 121 aaatgaaaac caaaaatgat agggggaatt gaaggtttta ttaaagtaag acagtatgat 181 cagatactta taaaaatttg tgaaaaaaag gcaataggta cagtattagt agggcctaca 241 cctgtcaaca taattgggcg aaacatgttg actcaaattg gttgtacatt aaattttcca 301 attagtccta ttgaaactgt gccagtaaaa ttaargccag gaatggatgg cccaaaagtt 361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagacatttg tacagagatg 421 gaaaaggaag gaaaaatttc aagaattggg cctgagaatc catacaatac tccagtattt 481 gctataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agarcttaat 541 aagagaactc aagacttctg ggargtycaa ttaggaatac ctcaycccgc aggattaaaa 601 aagaayaaat cagtaacaat actagatgtg ggggatgcat atttttcagt tcccttggat 661 gaggatttta gaaagtatac agcattcacc atacctagta caaataatga aacaccaggg 721 attagatatc agtataatgt gctgccacaa ggatggaaag gatcaccagc aatttttcag 781 gcaagcatga caaaaatctt acagcctttt agaacagaaa atccagagat ggtgatctat 841 caatatgtgg atgayttata tgtaggatca gatttagaga tagggcagca tagagcaaaa 901 atagagaagc tgagagagca tctactgaga tggggattta ccacaccaga caaaaarcat 961 caraaagaac ctccatttct ttggatgggg tatgaactcc atcctgacaa atggacagtc 1021 cagcctatac aactgccaaa taaagactgc tggactgtca atgatataca gaagttagtg 1081 ggaaaactaa attgg //
LOCUS LC269863 1095 bp RNA linear VRL 09-NOV-2017 DEFINITION Human immunodeficiency virus 1 pol gene for pol protein, partial cds, isolate: 09GH.NJ40. ACCESSION LC269863 VERSION LC269863.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1095) AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K. TITLE Direct Submission JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Nicholas Israel Nii-Trebi University of Ghana School of Biomedical and Allied Health Sciences, Medical Laboratory Sciences; Accra, Ghana URL :http://chs.ug.edu.gh/ REFERENCE 2 AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S., Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and Ampofo,W.K. TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance among treatment-experienced adults in northern Ghana JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017) REMARK DOI:10.1099/jmm.0.000621 COMMENT FEATURES Location/Qualifiers source 1..1095 /collection_date="2009-02-20" /country="Ghana:Tamale" /db_xref="taxon:11676" /host="Homo sapiens subject #NJ40" /isolate="09GH.NJ40" /isolation_source="plasma" /mol_type="genomic RNA" /organism="Human immunodeficiency virus 1" CDS <1..>1095 /codon_start=1 /gene="pol" /product="pol protein" /protein_id="BBA66830.1" /transl_table=1 /translation="PQITLWQRPLVTVRIGEQLIEALLDTGADDTVLEEINLPGRWRP KMIGGIGGFIKVRQYDQILMEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPIF AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP LDEEFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKHNPE IIIYQYMDDLYVGSDLEIGQHRAKVEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNW" BASE COUNT 426 a 169 c 233 g 266 t ORIGIN 1 cctcaaatca ctctttggca acgaccctta gttacagtaa gaatagggga acagttaata 61 gaagctctat tagatacagg agcagatgat acagtattag aggaaataaa tttaccagga 121 agatggagac caaaaatgat agggggaatt ggcggtttta tcaaagtaag acaatatgat 181 cagatactaa tggaaatttg tggaaaaagg gccataggta cagtattagt aggacccacg 241 cctgtcaaca taattggaag aaatatgttg actcaaattg gttgtacttt aaattttcca 301 attagtccta ttgaaactgt gccagtaaaa ttaaagccag gaatggatgg accaaaggtt 361 aaacagtggc cattgacaga agaaaaaata aaagcattaa cagacatttg tacagagatg 421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaacac tccaatattt 481 gctataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agagctcaat 541 aaacgaactc aagacttctg ggaggtccaa ttaggaatac ctcatcctgc gggattaaaa 601 aagaaaaaat cagtaacagt actagatgta ggggatgcat atttttcagt tcctttagat 661 gaagaattta gaaagtatac tgcattcact atacctagtg taaataatga gacaccaggg 721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag 781 gcaagcatga caaaaatttt agagcccttt agaaaacata atccagaaat aattatctat 841 caatacatgg atgacttgta tgtaggatct gatttggaaa tagggcagca tagagcaaaa 901 gtagaggagt tgagagaaca tctrctgaaa tggggattta ctacaccaga caaaaagcat 961 cagaaggaac ctccatttct ttggatggga tatgagctcc atcctgacaa atggacagtc 1021 cagcctatac agttgccaga caaagacagc tggactgtca atgatataca gaaattagta 1081 ggaaaactaa attgg //
LOCUS LC269864 1095 bp RNA linear VRL 09-NOV-2017 DEFINITION Human immunodeficiency virus 1 pol gene for pol protein, partial cds, isolate: 09GH.NJ44. ACCESSION LC269864 VERSION LC269864.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1095) AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K. TITLE Direct Submission JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Nicholas Israel Nii-Trebi University of Ghana School of Biomedical and Allied Health Sciences, Medical Laboratory Sciences; Accra, Ghana URL :http://chs.ug.edu.gh/ REFERENCE 2 AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S., Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and Ampofo,W.K. TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance among treatment-experienced adults in northern Ghana JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017) REMARK DOI:10.1099/jmm.0.000621 COMMENT FEATURES Location/Qualifiers source 1..1095 /collection_date="2009-02-20" /country="Ghana:Tamale" /db_xref="taxon:11676" /host="Homo sapiens subject #NJ44" /isolate="09GH.NJ44" /isolation_source="plasma" /mol_type="genomic RNA" /organism="Human immunodeficiency virus 1" CDS <1..>1095 /codon_start=1 /gene="pol" /product="pol protein" /protein_id="BBA66831.1" /transl_table=1 /translation="PQITLWQRPVVTVKIAGQLKEALLDTGADDTVLEDINLPGKWKP KMIGGIGGFIKVRQYDQILIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS PIETVPVTLKPGMDGPKVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPVF AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP LDENFRKYTAFTIPSTNNETPGVRYQYNVLPQGWKGSPAIFQASMTKILEPFRSQNPE IIIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLRWGLTTPDKKHQKEPPFLWMGYELH PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNW" BASE COUNT 416 a 171 c 231 g 258 t ORIGIN 1 cctcaaatca ctctttggca acgacccgtt gtcacagtaa aaatagcagg gcagctaaaa 61 gargctctat tagatacagg agcagatgat acagtaytag aagacataaa tttgccagga 121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 181 cagatactta tagaaatttg tggraaaagg gctataggta cagtattggt aggacctaca 241 cctgtcaaca taattggrag aaacatgttg actcagattg gttgtacttt aaattttcca 301 attagtccta ttgaaactgt accagtaact ttaaaaccag gaatggatgg accaaargtt 361 aagcaatggc cattgacaga agaaaaaata aaagcattra cagaratttg taaagagatg 421 gaagaggaag gaaaaatytc aaaaattggg cctgaaaatc catacaatac tccagtattt 481 gctataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agagctsaat 541 aaaagaactc aggacttctg ggaagttcaa ttagggatac cgcatccagc rggtttgaaa 601 aagaaaaaat cagtaacagt actrgatgtg ggggacgcat acttttcagt tcctttagat 661 gaaaacttta gaaagtatac tgcgttcacc atacctagta caaacaatga gacaccagga 721 gtcagatatc agtacaatgt gctgccacag ggatggaaag gttcaccagc aatatttcar 781 gcaagcatga caaaaatttt agarcccttt agatcacaaa atccagaaat aattatytat 841 caatacatgg atgayttgta tgtaggatct gatttggaaa taggacagca tagagcaaaa 901 atagaggagc tgagagctca tctattgagr tggggattaa ctacaccaga caaaaagcat 961 cagaaggaac ctccatttct ttggatggga tatgagctcc atcctgacaa atggacagtc 1021 cagcctatac arytgccaga aaaagacagc tggactgtca atgatataca gaaattagtg 1081 ggaaaaytaa attgg //
LOCUS LC269865 1095 bp RNA linear VRL 09-NOV-2017 DEFINITION Human immunodeficiency virus 1 pol gene for pol protein, partial cds, isolate: 09GH.NJ46. ACCESSION LC269865 VERSION LC269865.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1095) AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K. TITLE Direct Submission JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Nicholas Israel Nii-Trebi University of Ghana School of Biomedical and Allied Health Sciences, Medical Laboratory Sciences; Accra, Ghana URL :http://chs.ug.edu.gh/ REFERENCE 2 AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S., Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and Ampofo,W.K. TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance among treatment-experienced adults in northern Ghana JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017) REMARK DOI:10.1099/jmm.0.000621 COMMENT FEATURES Location/Qualifiers source 1..1095 /collection_date="2009-02-20" /country="Ghana:Tamale" /db_xref="taxon:11676" /host="Homo sapiens subject #NJ46" /isolate="09GH.NJ46" /isolation_source="plasma" /mol_type="genomic RNA" /organism="Human immunodeficiency virus 1" CDS <1..>1095 /codon_start=1 /gene="pol" /product="pol protein" /protein_id="BBA66832.1" /transl_table=1 /translation="PQITLWQRPLVTAKIGGQLIEALLDTGADDTVLEEIXLPGKWKP KMIGGIGGFIKVRQYDQIHLEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPIF AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVP LDXDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRVKNPE MVIYQYMDDLYVGSDLEIEQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH PDKWTVQSIELPEKDSWTVNDIQKLVGKLNW" BASE COUNT 435 a 173 c 220 g 254 t ORIGIN 1 cctcaaatca ctctttggca acgaccctta gtcacagcaa aaataggggg acagctaata 61 gaagccctat tagacacagg agcagatgat acagtaytag aagaaatawa tttaccagga 121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat 181 caaatacatc tagaaatttg tggaaaaaag gccataggta cagtattagt aggacctaca 241 cctgtcaaca taatwggacg aaatatgttg actcagattg gttgtactyt aaattttcca 301 attagtccta ttgaaactgt accagtaaaa ttaaarccag gaatggatgg cccaaaggtt 361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagacatttg tacagaaatg 421 gaaaaggaag gaaagatttc aaaaattgga cctgaaaatc catacaatac tccaatattt 481 gcaataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaactcaay 541 aagagaactc aagacttctg ggaggtccaa ttaggaatac ctcatcccgc gggattraaa 601 aagaayaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat 661 raagacttta gaaagtatac tgcattcact atacctagtg taaataatga gacaccaggg 721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag 781 gcaagcatga caaaaatctt agagcccttt agagtaaaaa atccagaaat ggtaatttac 841 caatatatgg atgatttgta tgtaggatct gacttagaga tagagcagca yagagcaaaa 901 atagaggagt tgagagaaca tctattgaga tggggattta ccacaccaga caaraaacat 961 cagaargaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 1021 cartctatag aactgccaga aaaagacagc tggactgtca atgatataca gaaattagta 1081 ggaaaactaa attgg //
LOCUS LC269866 1095 bp RNA linear VRL 09-NOV-2017 DEFINITION Human immunodeficiency virus 1 pol gene for pol protein, partial cds, isolate: 09GH.NJ59. ACCESSION LC269866 VERSION LC269866.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1095) AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K. TITLE Direct Submission JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Nicholas Israel Nii-Trebi University of Ghana School of Biomedical and Allied Health Sciences, Medical Laboratory Sciences; Accra, Ghana URL :http://chs.ug.edu.gh/ REFERENCE 2 AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S., Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and Ampofo,W.K. TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance among treatment-experienced adults in northern Ghana JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017) REMARK DOI:10.1099/jmm.0.000621 COMMENT FEATURES Location/Qualifiers source 1..1095 /collection_date="2009-02-20" /country="Ghana:Tamale" /db_xref="taxon:11676" /host="Homo sapiens subject #NJ59" /isolate="09GH.NJ59" /isolation_source="plasma" /mol_type="genomic RNA" /organism="Human immunodeficiency virus 1" CDS <1..>1095 /codon_start=1 /gene="pol" /product="pol protein" /protein_id="BBA66833.1" /transl_table=1 /translation="PQITLWQRPLVTVRIGGQLIEALLDTGADDTVLEDINLPGKWKP KMIGGIGGFIKVRQYDQIAIEICGKKAIGSVLVGPTPVNIIGRNMLTQIGCTLNFPIS PIETVPVKLXPGMDGPKVKQWPLTEEKIKALTEICAEMEKEGKISKIGPENPYNTPVF AIKKKDSTKWRKLVDFRELNKRTQDFCEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP LDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPE IVIYQYMDDLYVGSDLEIGQHRAKVEELREHLLKWGLTTPDKKHQKEPPFLWMGYELH PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNW" BASE COUNT 428 a 172 c 232 g 257 t ORIGIN 1 cctcaaatca ctctttggca acgaccctta gtcacagtaa gaataggggg acagctaata 61 gaagccctat tagayacagg agcagatgay acagtattag aagayataaa tttaccagga 121 aaatggaaac craaaatgat agggggaatt ggaggtttta tcaaagtaag gcaatatgat 181 cagatagcta tagaaatttg tggaaaaaag gctataggtt cagtattagt aggacctaca 241 cctgtcaaca taattggacg aaayatgttg actcagattg ggtgtacttt aaattttcca 301 attagtccta ttgaaactgt accagtaaaa ttaargccag gaatggatgg tccaaaagtt 361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tgcagagatg 421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat 541 aagagaactc aagacttctg cgaggtccaa ttaggaatac ctcatcctgc aggattaaaa 601 aagaagaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat 661 gaagacttta gaaagtatac tgcattcact atacctagtg taaataatga gacaccaggg 721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag 781 gcaagcatga caaaaatctt agagcccttt agaacaaaaa atccagagat agtgatctac 841 caatatatgg atgatttata tgtaggatct gacttggaga tagggcagca cagagcaaaa 901 gtagaggagt tgagagaaca tctactgaaa tggggattaa ccacaccaga taaaaaacat 961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 1021 cagcctatac agctaccaga gaaggacagc tggactgtca atgatataca gaaattagtg 1081 ggaaaactaa attgg //
LOCUS LC269867 1095 bp RNA linear VRL 09-NOV-2017 DEFINITION Human immunodeficiency virus 1 pol gene for pol protein, partial cds, isolate: 09GH.NJ63. ACCESSION LC269867 VERSION LC269867.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1095) AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K. TITLE Direct Submission JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Nicholas Israel Nii-Trebi University of Ghana School of Biomedical and Allied Health Sciences, Medical Laboratory Sciences; Accra, Ghana URL :http://chs.ug.edu.gh/ REFERENCE 2 AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S., Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and Ampofo,W.K. TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance among treatment-experienced adults in northern Ghana JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017) REMARK DOI:10.1099/jmm.0.000621 COMMENT FEATURES Location/Qualifiers source 1..1095 /collection_date="2009-02-20" /country="Ghana:Tamale" /db_xref="taxon:11676" /host="Homo sapiens subject #NJ63" /isolate="09GH.NJ63" /isolation_source="plasma" /mol_type="genomic RNA" /organism="Human immunodeficiency virus 1" CDS <1..>1095 /codon_start=1 /gene="pol" /product="pol protein" /protein_id="BBA66834.1" /transl_table=1 /translation="PQITLWQRPVVKVRIEGQLIEALLDTGADDTVLEEINLPGKWKP KMIGGIGGFIKVRQYDQIIIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVF AIKKKDSTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVP LDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPE IIIYQYVDDLYVXSDLEIGQHRTKIEELREHLLRWGFTTPDKKYQKEPPFLWXGYELH PDKWTVQPVQLPNKDSWTVNDIQKLVGKLNW" BASE COUNT 435 a 172 c 227 g 255 t ORIGIN 1 cctcaaatca ctctttggca acgacccgta gtcaaagtaa gaatagaggg acagctaata 61 gaagctctat tagacacagg agcagatgat acagtattag aagaaataaa tttaccagga 121 aaatggaaac cgaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 181 cagataatta tagaaatttg tggaaaaaag gccataggta cagtattagt aggacctaca 241 cctgtcaaca tmattggacg aaacatgttg acccagattg gttgtacytt aaattttcca 301 attagtccta ttgaaactgt accagtaaaa ttaaaaccag gaatggatgg cccaaaggtt 361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatttg tacagaaatg 421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaacc catacaatac tccagtattt 481 gccataaaga aaaaggatag tactaaatgg agaaaattag tagatttcag ggaactcaat 541 aagagaactc aagatttctg ggagatccaa ttgggaatac ctcatcccgc aggrttaaaa 601 aagaaaaaat cagtaacagt actggaygtg ggggatgcat atttttcagt tcccttagac 661 aaagaattta gaaagtatac tgcattcact atacctagta cgaataatga gacaccaggg 721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag 781 gcaagcatga caaaaatctt agagcctttt agaacaaaaa atccagagat aataatctac 841 caatatgtgg atgatttata tgtagsatca gacttagaga tagggcagca tagaacaaaa 901 atagaggagt tgagagaaca tctactgagg tggggattta ccacaccaga caaaaaatat 961 cagaaagaac ctccatttct ttggmtggga tatgaactcc atcctgataa atggacagtc 1021 cagcctgtac agttgccaaa caaagacagc tggactgtca atgatataca gaaattagta 1081 ggaaaactaa attgg //
LOCUS LC269868 1095 bp RNA linear VRL 09-NOV-2017 DEFINITION Human immunodeficiency virus 1 pol gene for pol protein, partial cds, isolate: 09GH.NJ74. ACCESSION LC269868 VERSION LC269868.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1095) AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K. TITLE Direct Submission JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Nicholas Israel Nii-Trebi University of Ghana School of Biomedical and Allied Health Sciences, Medical Laboratory Sciences; Accra, Ghana URL :http://chs.ug.edu.gh/ REFERENCE 2 AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S., Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and Ampofo,W.K. TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance among treatment-experienced adults in northern Ghana JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017) REMARK DOI:10.1099/jmm.0.000621 COMMENT FEATURES Location/Qualifiers source 1..1095 /collection_date="2009-02-20" /country="Ghana:Tamale" /db_xref="taxon:11676" /host="Homo sapiens subject #NJ74" /isolate="09GH.NJ74" /isolation_source="plasma" /mol_type="genomic RNA" /organism="Human immunodeficiency virus 1" CDS <1..>1095 /codon_start=1 /gene="pol" /product="pol protein" /protein_id="BBA66835.1" /transl_table=1 /translation="PQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEEIDLPGKWKP KMIGGIGGFIKVRQYDHILIEISGKKAIGTVLVGPTPINIIGRNMLTQIGCTLNFPIS PIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIF AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP LDENFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH PDKWTVQPIQLPNKEVWTVNDIQKLVGKLNW" BASE COUNT 440 a 178 c 225 g 252 t ORIGIN 1 cctcaaatca ctctttggca acgaccctta gtcacagtaa aaataggggg acagctaata 61 gaagccctat tagacacagg agcagatgac acagtattag aagaaataga tttaccagga 121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 181 catatactta tagaaattag tggaaaaaag gctataggga cagtattagt aggacctaca 241 cctatcaaca taattgggag aaatatgtta actcagattg gctgtacttt aaactttcca 301 ataagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagggtt 361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatttg tacagaaatg 421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaacac cccaatattt 481 gccataaaga aaaaagacag tactaaatgg agaaaattgg tagatttcag agaactcaat 541 aaaaggactc aagacttctg ggaggtccaa ttagggatac ctcaccccgc agggttaaaa 601 aagaaaaaat cagtaacagt attagatgtg ggagatgcat acttttcagt tcccttagat 661 gaaaatttta gaaaatatac tgcatttact atacctagtg taaacaatga gacaccagga 721 attagatatc agtacaatgt gctcccacag ggatggaaag gatcaccagc aatatttcag 781 agtagcatga caaaaatctt agagcccttt agagcaaaaa acccagaaat agtaatctac 841 cagtacatgg atgatttata tgtaggatct gacttagaaa tagggcagca tagagcaaag 901 atagaggagt taagagaaca tttattaaga tggggattta ccacaccaga taaaaaacat 961 caaaaggaac ctccattcct ttggatggga tatgagctcc atcctgacaa atggacggta 1021 caacctatac agctgccaaa caaggaagtc tggactgtca atgatataca aaagttagtg 1081 ggaaaactaa attgg //
LOCUS LC269869 1095 bp RNA linear VRL 09-NOV-2017 DEFINITION Human immunodeficiency virus 1 pol gene for pol protein, partial cds, isolate: 09GH.NJ76. ACCESSION LC269869 VERSION LC269869.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1095) AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K. TITLE Direct Submission JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Nicholas Israel Nii-Trebi University of Ghana School of Biomedical and Allied Health Sciences, Medical Laboratory Sciences; Accra, Ghana URL :http://chs.ug.edu.gh/ REFERENCE 2 AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S., Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and Ampofo,W.K. TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance among treatment-experienced adults in northern Ghana JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017) REMARK DOI:10.1099/jmm.0.000621 COMMENT FEATURES Location/Qualifiers source 1..1095 /collection_date="2009-02-20" /country="Ghana:Tamale" /db_xref="taxon:11676" /host="Homo sapiens subject #NJ76" /isolate="09GH.NJ76" /isolation_source="plasma" /mol_type="genomic RNA" /organism="Human immunodeficiency virus 1" CDS <1..>1095 /codon_start=1 /gene="pol" /product="pol protein" /protein_id="BBA66836.1" /transl_table=1 /translation="PQITLWQRPLVPVKIGGQLIEALLDTGADDTVLEEIDLPGKWKP KMIGGIGGFIKVRQYDQVLIEISGRKAIGTVLVGPTPINIIGRNMLTQIGCTLNFPIS PIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEEKISKIGPENPYNTPIF AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP LDESFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE IVIYQYMDDLYVGSDLEIGQHRAKIKELREHLLRWGFTTPDKKHQKEPPFLWMGYELH PDKWTVQPIQLPNKEVWTVNDIQKLVGKLNW" BASE COUNT 437 a 178 c 229 g 251 t ORIGIN 1 cctcaaatca ctctttggca acgaccctta gtcccagtaa aaataggggg acagctaata 61 gaagccctat tagatacagg agcagatgac acagtattag aagaaataga tttaccagga 121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag gcagtatgat 181 caagtactta tagaaattag tggaagaaag gctataggga cagtattagt aggacctaca 241 cctatcaaca taattgggag aaatatgttg actcagattg gctgtacttt aaactttcca 301 ataagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagggtt 361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatttg tacagaaatg 421 gaaaaggaag aaaaaatttc aaaaattggg cctgaaaatc catacaacac tccaatattt 481 gccataaaga aaaaagacag tactaaatgg agaaaattgg tagatttcag agaactcaat 541 aaaaggactc aagacttctg ggaggtccaa ttagggatac ctcaccccgc ggggttaaaa 601 aaaaaaaaat cagtaacagt attagatgtg ggagatgcat acttttcagt tcccttagat 661 gaaagcttta gaaagtatac tgcatttact atacctagta gaaacaatga gacaccagga 721 attagatatc agtacaatgt gctcccacag ggatggaaag gatcaccagc aatatttcag 781 agtagcatga caaaaatctt agagcccttt agagcaaaaa acccagaaat agtgatctac 841 caatacatgg atgatttata tgtaggatct gacttagaaa tagggcagca tagagcaaag 901 ataaaggagt taagagaaca tttattaaga tggggattta ccacaccaga taaaaaacat 961 caaaaggaac ctccattcct ttggatggga tatgagctcc atcctgacaa atggacggta 1021 caacctatac agctgccaaa caaggaagtc tggactgtca atgatataca aaagttagtg 1081 ggaaaactaa attgg //
LOCUS LC269870 1095 bp RNA linear VRL 09-NOV-2017 DEFINITION Human immunodeficiency virus 1 pol gene for pol protein, partial cds, isolate: 09GH.NJ95. ACCESSION LC269870 VERSION LC269870.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1095) AUTHORS Nii-Trebi,N.I., Ibe,S. and Ampofo,W.K. TITLE Direct Submission JOURNAL Submitted (12-MAY-2017) to the DDBJ/EMBL/GenBank databases. Contact:Nicholas Israel Nii-Trebi University of Ghana School of Biomedical and Allied Health Sciences, Medical Laboratory Sciences; Accra, Ghana URL :http://chs.ug.edu.gh/ REFERENCE 2 AUTHORS Nii-Trebi,N.I., Brandful,J.A.M., Ibe,S., Sugiura,W., Barnor,J.S., Bampoe,P.O., Yamaoka,S., Matano,T., Yoshimura,K., Ishikawa,K. and Ampofo,W.K. TITLE Dynamic HIV-1 genetic recombination and genotypic drug resistance among treatment-experienced adults in northern Ghana JOURNAL J. Med. Microbiol. 66, 1663-1672 (2017) REMARK DOI:10.1099/jmm.0.000621 COMMENT FEATURES Location/Qualifiers source 1..1095 /collection_date="2009-02-27" /country="Ghana:Tamale" /db_xref="taxon:11676" /host="Homo sapiens subject #NJ95" /isolate="09GH.NJ95" /isolation_source="plasma" /mol_type="genomic RNA" /organism="Human immunodeficiency virus 1" CDS <1..>1095 /codon_start=1 /gene="pol" /product="pol protein" /protein_id="BBA66837.1" /transl_table=1 /translation="PQITLWQRPLXTVRIGGQLIEALLDTGADDTVLEDINLPGKWKP KMIGGIGGFIKVRQYDQILMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIXICAEMEKEGKISKIGPENPYNTPVF VIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVXVLDVGDAYFSVP LDKDFRKYTAFTIPSVNNEKPGIRYQYNVLPQGWKGSPAIFQASMIKILEPFRTNNPE MVIYQYMDDLYVGSDLEIGQHRAKIEELRKYLLKWGFTTPDKKHQKEPPFLWMGYELH PDKWTVQPIQLPXKDXWTVNDIQKLVGKLNW" BASE COUNT 428 a 175 c 226 g 257 t ORIGIN 1 cctcaaatca ctctttggca acgaccctta rtcacagtaa gaataggggg ccagctaata 61 gaagccctat tagacacagg agcagatgat acagtattag aagacataaa tttaccagga 121 aaatggaagc caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat 181 cagatactta tggaaatttg tggraaaaag gccataggta cagtattagt aggacctaca 241 ccggtcaaca taattggacg aaayatgttg actcagattg gttgtacttt aaattttcca 301 attagtccta ttgaaaccgt gccagtaaaa ttaaagccag gaatggatgg cccaaaggtt 361 aaacaatggc ccttgacaga agaaaaaata aaagcattaa tagakatttg tgcagaaatg 421 gaaaaggaag gaaaaatttc aaaaattggc cctgaaaatc catacaatac tccagtattt 481 gttataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat 541 aagagaactc aagacttttg ggaggtccaa ttaggaatac ctcatcccgc gggattaaaa 601 aagaaaaaat cagtarcagt actggatgtg ggggatgcat atttctcagt tcccctagat 661 aaagatttta gaaagtatac tgcattcact atacctagtg taaataatga gaaaccaggg 721 attagatatc agtacaatgt acttccacag ggatggaagg gatcaccagc aatatttcag 781 gcaagcatga taaaaatctt agaaccatty agaacaaaca atccagagat ggtgatctac 841 caatacatgg atgatttata tgtaggatct gacttagaga tagggcaaca cagagcaaaa 901 atagaggagt tgagaaaata tctactgaaa tggggattca ctactccaga caaaaaacat 961 cagaaagaac caccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 1021 cagcctatac agctgccaga maaagacary tggactgtca atgatataca gaaactagtg 1081 ggaaaattaa attgg //