LOCUS LC205688 5871 bp DNA linear PLN 19-APR-2018
DEFINITION Raphanus sativus RsF3'H gene for Flavonoid 3' hydroxylase, partial
cds, cultivar: Chounan-aomaru-koshin.
ACCESSION LC205688
VERSION LC205688.1
KEYWORDS .
SOURCE Raphanus sativus (radish)
ORGANISM Raphanus sativus
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Raphanus.
REFERENCE 1 (bases 1 to 5871)
AUTHORS Nakatsuka,A. and Kobayashi,N.
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2016) to the DDBJ/EMBL/GenBank databases.
Contact:Akira Nakatsuka
Shimane University, Faculty of Life and Environmental Science;
1060 Nishikawatsu, Matsue, Shimane 690-8504, Japan
REFERENCE 2
AUTHORS Masukawa,T., Cheon,K.-S., Mizuta,D., Nakatsuka,A. and Kobayashi,N.
TITLE Insertion of a Retrotransposon into a Flavonoid 3'-hydroxylase
Homolog Confers the Red Root Character in the Radish (Raphanus
sativus L. var. longipinnatus L. H. Bailey)
JOURNAL Hort. J. 87, 89-96 (2018)
REMARK DOI:10.2503/hortj.OKD-075
COMMENT
FEATURES Location/Qualifiers
source 1..5871
/cultivar="Chounan-aomaru-koshin"
/db_xref="taxon:3726"
/mol_type="genomic DNA"
/organism="Raphanus sativus"
CDS join(107..398,5726..>5871)
/codon_start=1
/gene="RsF3'H"
/product="Flavonoid 3' hydroxylase"
/protein_id="BAZ91632.1"
/transl_table=1
/translation="MTNLFLTILLPTFIFLIVLVLSRRRNNRLPPGPNPWPIIGNLPH
MGPKPHQTLAAMVTTYGPILHLRLGFADVVVAASKSVAEQFLKVHDANFASRPPNSGA
KHMAYNYQDLVFAPYGQRWRMLRKISSVHLFSAKALEDFKHVRQ"
misc_feature 394..398
/note="Target Site Duplication"
mobile_element 399..5720
/mobile_element_type="retrotransposon:gypsy-Ty3"
misc_feature 5721..5725
/note="Target Site Duplication"
BASE COUNT 1764 a 1088 c 1464 g 1555 t
ORIGIN
1 ctaaccgaga tatgcatggt tttgtcaatt aaaaaaatac ctttatctta tatatagctt
61 atgcttctca ttcctcattt ctcacttacc attcaaaccc accactatga ctaatctctt
121 cctcacaatc cttctcccta ctttcatctt ccttattgtc ctcgtcttat ctcgccgccg
181 caacaaccgt ctccctcccg gtccaaaccc atggcccatc atcgggaacc tccctcacat
241 gggccctaaa ccccatcaaa cactagccgc catggtaacc acatacggcc ctatcctcca
301 cctacggcta gggttcgccg acgttgtggt tgccgcctct aaatccgtgg ccgaacagtt
361 cttgaaagtt cacgatgcca attttgctag ccgaccactg ataagccttg gcgtagttat
421 gtgaggaaga gaagaagaaa tcagaagtct gaacgtgacg tgggagaaga gcaaacaaga
481 gactttgatg acgtggaaga acagatggaa gagaagggaa attacgaggc tgttatggcc
541 gttacagttt gagtatagtt tgttacttca cttactatat aaagagataa tgattgtact
601 gtagtgggtg ggcttttatc acattggtaa aaggagatta gagtgaaagc tcttttcttg
661 ggctctacta cgggatctgt ccgtagagag aaggtataca gtacaatact attcatttac
721 aaggatttga acgtatcatt tggtgcggtg agcaacgtcg agcatagcga tggcggagct
781 gagtcaagaa gatgcgttac aacgactcgg cgagatcgat aacacggtgg cgtttcacga
841 agagcagttc gaaatcatca gaggaggtta cgatcgagtc gtgaaatcaa acacgacgat
901 ggagaagcag atcggaactt tcgacggacg aatgcaagca gtagaaggtc gtatctcttc
961 gatcgaagaa acgatgaagg cgatattgcg taacctagag aaacgaccaa tcgaatcagc
1021 gattcatcag cagtcgaatc atccaacgat ctccgattct caggtacatc cttcttcatc
1081 ggaacctcac cggatggaac gagatctagg ttatcggcag atagatcaga ggatagagac
1141 tagagatcgt ttgtttaaga aagttgaaat gcctgtgttt gctggatcta atccgtatgg
1201 ctggatcacg agagcggaac gatattttcg ggtgacgcga tacgatccta cggcgagatt
1261 agagctagta tcaatgtgct tagaggaaga cgctttgagc tggtttaact atgagatgga
1321 acatcggccg ttttatgact ggctggagtt caagagaaga atgctagctc gatttgctga
1381 ttcttttgag aagacaccag ggaagagatt cttcggtatt caacaatctg gaactattgc
1441 cgaatacgtt agagagtttc aggaattggc ttatcaggtg cacgtcgacg aagaacacaa
1501 gattgatatc ttctttaatg gactgaagaa agagatgaag gaggttatca aactaaagga
1561 accaaaaaca cttccggatc atattgaagc agtcattaag atggaggata gcgaattctg
1621 cagattgata gctgggggaa aacagagtga cagtaaagct aagcagccac tcaacactca
1681 gttcagaaca gctacgacag caggaaatca acattggaga aacaagcaga gcagtgatga
1741 ttcaggatct aaatcaagtg aaagaacagt cacgacgaag tctacagaga gtgttcagaa
1801 ccaggtcaaa ctgtcagatg cagaatatga tcacaagaag aagaacggtt tatgtttcaa
1861 atgcccagag agatggtcac gaactcatgt atgcaaaaat aaacagctac aagttctgat
1921 agtttctcga ggtaatgaaa tggagttagt ggacgaagag ttcgaagatg cagtggatca
1981 aattcaggac accacgactg aagtaataga gatgtctcta tattcattca tgggttggtc
2041 atctccgaca acgatgaagg tcgaaggcag aattgggaaa cttcgagtag tggtacttct
2101 tgatagtggg gcaacacaca atttcatctc accatcgaca gttcaacgag ctcatctgga
2161 gattacatca gcaaagaatc tgacagtgat agtgggaacg ggtatatcag tcagtggttc
2221 aggagtttgt aaggcagtac agttacaggt tcaaaaggtt cgcataacga cagactttgt
2281 gatattggaa ccgggttgtg cagatataat tcttggagta cagtggctac gtacactagg
2341 gaagtgtgaa gtggattggg agcaacaaga gttctcgttt aaagtgaacg gagagacagt
2401 gactttattt ggggatcatc agttacatgg tcagttggga ttgacacagt tggaggatga
2461 gtctaaacag atacagttca gtgttcagaa tatgtcaacc gagacagtgg ataagggttt
2521 gattccgcag cagatagcga gagtagtgga cagttttaca gaggtttttg cggaaccaac
2581 tgagttacct ccaaaaagag gttttgaaca ttcaatacgt ttgagagagg gatctgaagc
2641 agtaacggta cgaccttata gatacccgca atcacacatg gaagctatag agaaaatggt
2701 taaagaaatg ctagcagctg gtatcattag aaggagcaga agtccttttg cgagtccagt
2761 tttattggtc aagaagaaaa caggagagtg gcgtttctgt attgactatc gtgctttaaa
2821 taaagcaacc gtggctgaca agtttccgat tccggtaatc gatcagttac tagacgagtt
2881 gcacggcgcc aagatatttt caaaacttga cttgcgatcg gggtatcacc agataagaat
2941 ggaggaggaa gatgtggaga aaactgcgtt tagaactcac gaaggccatt acgagttcct
3001 ggtaatgccc ttcggtctta ccaacgcacc agcaaccttt caagccttaa tgaatgaagt
3061 atttcggccg tttctccgca agttcgtgtt ggtcttcttt gatgatatac tggtttacag
3121 tacatcagaa gaggagcatc aatatcatct atctttggtg ttggagaagc ttaaagagta
3181 ttccttactg gctaatagga agaaatgttc attcggacag acgcatattg attacttggg
3241 gcacattatc tcagctcaag gcgtagcaac agatccagag aagactaaag caatgacatc
3301 gtggcctatt cctaaatctg tcaaggactt gcgaggattc ttgggcctca cgggttatta
3361 caggcgtttt gtgatgttat atggatctat tgctcgacct ttaaccaatt tactgaagat
3421 agacagtttc cactggacaa cagagactca agaagcattt gatcggttga aaatagctat
3481 ggctacagca ccagtactta cactgccgaa ctttaaagaa ttgttttgtg tggaagctga
3541 tgcatcaggg tttgggttag gtgcggtatt gatgcaaaac cagcagccag tggcgtactt
3601 gcagcagagc tttatctgaa aaagagcaac tcaaacctat ctacgaaaga gaattaatgg
3661 ccattgtatt ggcaatacag aaatggcgcc attatctctt aggccgaaag ttcagagttc
3721 atacagatca gaaaagtctg aagtttctgc ttgatcaacg tggtgtttct cttgattatc
3781 agaaatggct taccaaattg ctaggatacg actttgatat tgtatacaag gcgggtatag
3841 ataacaaagc agcagatggg ttgtctcgaa ttgtgtgggg agaagctcag acaagtcagc
3901 agtttctggg agctattaca gttacttcaa gtttgcaaat gcaagactta tttgaagaag
3961 ttgatgcaaa tgagaagcta caggagatgg ttcagaaggt ggttaagggt gaggaactta
4021 aaccaggata ttctgtgatc agtggcagat tattttacaa gagaagattg gtgttaccgc
4081 gcacttcaca atttattcca gtaattctga aggagtatca tgatggtttt gtgggaggtc
4141 actctggaac cttgaaaacg actaagcgga ttcagcgcct ttttcattgg gcaaacatga
4201 agagtgacat tcagaaatac gtggcagaat gtggtgtgtg tcaaaagcat aagtactcaa
4261 ctctcaaacc agcagggttg ctacaaccta ttccggttcc gactcagatt tggacagaat
4321 tatcgatgga ttttattgaa ggtcttccta aatctgaggg aaagaatgtg attttggtgg
4381 tagtggaccg gttaagcaaa tacagccatt tcattgggct gaaacatcca tttactgcag
4441 ctacggtagc agaggcgttc gtacgagaag tagttcgact tcatgggttt ccagcctcaa
4501 taatttcgga tcgtgatcga gtgtttctaa gcaagttttg gaaagagtgt tttcgattag
4561 caggcactca gctcaaattc agcacagctt accatcctca gagtgatggc caaacagagg
4621 tggtaaacag atgtattgaa gcttatttga gatgttttac atcatcacat ccgaagaaat
4681 ggcatgggtt tttggcttgg gcagagtatt ggtacaacac atctcatcat accgccattg
4741 actcgactcc tttcaagctg gtttatggta gagatccgcc agagttgctg tggtttgagc
4801 atggctctac caataacttt gagttggaga gatcgctaag ggacagagat gcaatgttac
4861 tcgatgcaaa ggaacattta cttaaagcgc aagctaggat gaagaataat gctgacaaac
4921 accgacgtga attggagttc acggtgggtt ctttagtgtt tttgaagctc aggccgtata
4981 ggcagacttc attaaccaag aatttctgtc aaaagcttgc cgccaagtac tatggtcctt
5041 ttccggtaat agaacgcatt ggggaagtcg cttatcgatt gaaattacct gcagagagca
5101 agatacatcc cgtatttcat gtgtctcaac tgaaaccagt gttgggccag ggtcatcagc
5161 tttctacttt acctcagttg gtggcagaat ccgaggaatt tgtggttcaa ccagagaaat
5221 tgatagagac aagatacgat ggggagggtc acttggaagc gctgattcat tggaaagggt
5281 taccttcaca tgagaggtct tggatgcgtg tgcgagacat tctgcgtgag tttccgtcct
5341 ccgagcttga ggacaagctc agactgataa gggggggtat tgataagcct tggcgtagtt
5401 atgtgaggaa gagaagaaga aatcagaagt ctgaacgtga cgtgggagaa gagcaaacaa
5461 gagactttga tgacgtggaa gaacagatgg aagagaaggg aaattacgag gctgttatgg
5521 ccgttacagt ttgagtatag tttgttactt cacttactat ataaagagat aatgattgta
5581 ctgtagtggg tgggctttta tcacattggt aaaaggagat tagagtgaaa gctcttttct
5641 tgggctctac tacgggatct gtccgtagag agaaggtata cagtacaata ctattcattt
5701 acaaggattt gaacgtatca accacctaac tccggagcca aacacatggc atacaattat
5761 caagatcttg tctttgcgcc ttatggacaa cgatggagaa tgttgaggaa gattagttct
5821 gttcatttat tttcagctaa agctctggaa gattttaaac atgttcgaca g
//