LOCUS KY928747 2484 bp RNA linear VRL 17-APR-2018
DEFINITION Marmot picobirnavirus clone c57139_g1_i1_libraryA_2484 segment I
putative ORF1 and putative capsid genes, complete cds.
ACCESSION KY928747
VERSION KY928747.1
KEYWORDS .
SOURCE Marmot picobirnavirus
ORGANISM Marmot picobirnavirus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes;
Durnavirales; Picobirnaviridae; Picobirnavirus.
REFERENCE 1 (bases 1 to 2484)
AUTHORS Luo,X.L., Lu,S., Jin,D., Yang,J., Wu,S.S. and Xu,J.
TITLE Marmota himalayana in the Qinghai-Tibetan plateau as a special host
for bi-segmented and unsegmented picobirnaviruses
JOURNAL Emerg Microbes Infect 7 (1), 20 (2018)
PUBMED 29511159
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2484)
AUTHORS Luo,X., Lu,S., Yang,J., Jin,D., Xiong,Y., Pu,J. and Xu,J.
TITLE Direct Submission
JOURNAL Submitted (11-APR-2017) National Institute for Communicable Disease
Control and Prevention, Chinese Center for Disease Control and
Prevention, 155 Changbai Road, Changping, Beijing, Beijing, China
COMMENT ##Assembly-Data-START##
Assembly Method :: Lasergene v. 6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2484
/organism="Marmot picobirnavirus"
/mol_type="genomic RNA"
/host="Marmota himalayana"
/db_xref="taxon:2161795"
/segment="I"
/clone="c57139_g1_i1_libraryA_2484"
/country="China"
/collection_date="2013"
5'UTR 1..198
CDS 199..750
/codon_start=1
/product="putative ORF1"
/protein_id="AVX53319.1"
/translation="MTKNQIDYQRLQEDRRNHRVVEAETNRSNLAHESVANREVGIKQ
ADLNETIRSNLARESETARSNRAKEIETARSNRANEAENYRSNVSREKETNRSNLAHE
ELTKAQQSETARHNKATEVLGFGDSIRAASALRQQTAASDIRNLVDSVRFMGTFSKAM
PTLPNPNQLRIGIAKRPLIEQFR"
CDS 763..2466
/codon_start=1
/product="putative capsid"
/protein_id="AVX53320.1"
/translation="MSKFQKVNDTNGVQTSAKSCPRGASVQSRALKDSGKKKRVSRTN
SKRSDILPDNNVRRNMVEGSNDPEWYITDEPTLNAVASLPFNQALGVMVDLGKGDNTS
VQSPSPDSIPGIMSIGVLPTIGISNDRTDPINMATYQLYAKIRAVISGERPYDPADLM
MFIIAGDSISTYYTFMCTIYGLISKYSFLNRYYAQAAVEALNVNYESVSTRLADFRAY
INLFAQRANSIPCPTGLPVYLRHATMFSRLYTDSVSETSQTYVLRPEGWYELNTSGSS
GTELHFIPWLATDNSEQSMPNKFGMVTLTRIMEIGNRLIQGMLLDSEILATIGGDMLK
TFGESTWHFSPIDETFITPVVYDEEMLYQINNLVLVGGLITEPFGSGNEYNYTQNPSE
GVLKFNPPFQSINPAVNRDNLLNIPFNVSPSPRLNMVMTRFMPVFNNFTYSTSRSAWV
YNLRSCGTEIATTAYIVRSYINSAQQIDFIPEGEFYSAMRLNSGVPQLINYWDKFQYA
PRIEWFTVNGEADSAKSIFNSLTGDLDYYSVISDETLSLMHQMALLKEFSVGNYNKGT
L"
3'UTR 2467..2484
BASE COUNT 807 a 445 c 524 g 708 t
ORIGIN
1 actaaataaa ccaaagaaag gagacatagt attatgaatt atgttacaat tactttatta
61 gtttcgttaa ttttacaatg catccagtta gctgtagtgt ttgatattca tgacactatg
121 ctttgggagc atgtaaaatg taacgatgct aaacactcag aaacaagtca ttcagaagaa
181 gataaggagg tgtgaagaat gacaaagaat caaattgatt atcagcgtct acaagaagat
241 cgaagaaatc atcgtgttgt agaggccgag acaaatcgta gtaatctagc ccatgagtca
301 gtagctaata gggaagtcgg aattaagcag gcagatttaa atgagactat ccgatctaat
361 ttagctagag aaagcgaaac agctcgatcc aatcgagcca aagaaattga aacagctcgg
421 tcaaatcgag ctaatgaggc agagaactac agaagtaatg tgtctagaga gaaggagact
481 aaccgctcta atctagcaca tgaagagctg actaaagctc aacaatctga aacagccagg
541 cataacaaag caacagaagt gctcgggttc ggcgactcaa tacgtgcagc ttcagcttta
601 aggcagcaga cagcagcatc agatatacgt aatctggttg attcagtcag atttatgggt
661 acgttttcta aggctatgcc tactctacca aacccaaatc agttgagaat cgggatagct
721 aaacgtccat taatcgaaca atttagatag gaggaattta gaatgagcaa atttcaaaaa
781 gtaaatgaca caaatggtgt gcagacatca gcaaaatctt gtccaagagg agcatctgtt
841 cagtccagag cattaaagga ttcaggaaag aagaaaagag tatccagaac caacagcaag
901 cggtcagata ttctccctga taataatgtt cgcaggaata tggttgaagg atcaaatgat
961 cctgaatggt atataacaga tgagcctacg ctaaatgcgg ttgcatcctt acccttcaat
1021 caagcacttg gtgtcatggt tgatttgggc aagggagata atacatcggt acagtcacca
1081 tctccagatt ctatccctgg aattatgtct attggtgttt tgcctacaat tggtatatcc
1141 aatgatagaa ctgacccaat taatatggca acttatcagt tatatgctaa gatcagggct
1201 gtgatatcag gtgagagacc ttacgatcca gccgatttaa tgatgtttat catagcgggt
1261 gacagtatta gcacatacta tacatttatg tgcacaatat atggtttgat atcaaaatat
1321 tccttcttga atagatatta tgcacaggca gcggtagagg ctctaaatgt aaattatgag
1381 agtgtgtcta ccaggcttgc tgacttcaga gcctacatca atctttttgc acagagagcc
1441 aactctattc catgccctac aggcttacct gtatatttga ggcacgctac tatgttctcg
1501 agattatata cagatagtgt gagtgaaacc tctcaaactt atgtcttaag accagagggt
1561 tggtacgaat tgaatacgag tggttcctca ggcacagagt tacattttat tccgtggctc
1621 gccacagata attctgagca gagcatgccc aataagtttg gcatggttac cctaacccga
1681 attatggaaa ttgggaatcg attgattcaa gggatgctcc tggattccga aattttagca
1741 actattggag gcgatatgtt gaagactttt ggtgaatcaa cttggcattt ctcaccaatt
1801 gatgaaacat ttataacgcc agttgtctat gatgaagaaa tgctttatca aattaacaat
1861 ctagttttag taggcggttt aatcactgag ccgtttggat caggcaatga gtataactat
1921 acacagaatc ctagcgaagg cgtgttaaag tttaatcctc catttcagtc tataaatcca
1981 gctgtgaata gagataatct gctgaatata ccatttaatg tatctccatc tccacgtttg
2041 aacatggtca tgacgcgttt catgcctgtg tttaataatt ttacatattc aacaagtagg
2101 agcgcatggg tatataattt gagatcatgc ggaactgaga tcgctacaac ggcatacatt
2161 gttaggagtt atatcaattc tgctcagcag atagatttta tacctgaggg tgaattctac
2221 agtgctatga gacttaactc aggtgttcca caactgatta attattggga caagttccag
2281 tatgcgccgc gtattgaatg gtttactgtg aatggggaag ccgattctgc taaaagtata
2341 tttaattctc ttactgggga tcttgattac tactctgtta tatcagacga aacattatct
2401 ctgatgcatc agatggctct tttaaaagag ttttctgtag gtaactataa taaaggtaca
2461 ctataaggca tagtatactt taat
//