LOCUS KN716607 97522 bp DNA linear CON 12-MAR-2015 DEFINITION Dictyocaulus viviparus strain HannoverDv2000 unplaced genomic scaffold D_viviparus-1.0_Cont458, whole genome shotgun sequence. ACCESSION KN716607 AZAF01000000 VERSION KN716607.1 DBLINK BioProject: PRJNA72587 BioSample: SAMN02873952 KEYWORDS WGS; HIGH_QUALITY_DRAFT. SOURCE Dictyocaulus viviparus (bovine lungworm) ORGANISM Dictyocaulus viviparus Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Strongyloidea; Metastrongylidae; Dictyocaulus. REFERENCE 1 (bases 1 to 97522) AUTHORS Mitreva,M. TITLE Draft genome of the bovine lungworm Dictyocaulus viviparus JOURNAL Unpublished REFERENCE 2 (bases 1 to 97522) AUTHORS Mitreva,M., Pepin,K.H., Abubucker,S., Martin,J., Minx,P., Warren,C., Palsikar,V.B., Zhang,X. and Wilson,R.K. TITLE Direct Submission JOURNAL Submitted (12-NOV-2013) The Genome Institute, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA COMMENT Dictyocaulus viviparus, the bovine lungworm, is the cause of parasitic bronchitis in cattle (husk, verminous pneumonia, dictyocaulosis) with a world wide distribution in temperate areas. The predominant hosts are cattle, but it can also infect deers. Infection occurs on pasture as infective larvae develop from L1 that are shed with the feces to free-living infective L3 that are ingested by cattle while grazing. Free-living larvae do not feed; survival on pasture is therefore limited to a few months depending on temperature and humidity. The parasite is able to interrupt development inside the host. Infective larvae that have been exposed to low temperatures on pasture before infection subsequently develop only to preadult larval stages that survive winter conditions as hypobiotic larvae in the lung and resume development in spring. These animals contaminate pastures the following spring and represent the major source of infection for other susceptible cattle. The strain being sequenced (HannoverDv2000) was obtained from the laboratory of Drs. Thomas Schnieder and Christina Strube (Christina.Strube@tiho-hannover.de) and has been maintained in calves since August 2000. Worm isolation and DNA extraction was performed by Christina Strube and/or the Genome Institute's production team. This assembly consists of fragments, 3kb and 8kb insert whole genome shotgun libraries. The sequences were generated on the Roch/454 platform and assembled using Newbler. To improve scaffolding, inhouse tools CIGA (Cdna tool for Improving Genome Assembly) and Pygap (Gap closure tool) were used to map 454 cDNA reads using blat to the genomic assembly to link genomic contigs based on cDNA evidence. Only joins confirmed by additional independent data typing were accepted and close gaps followed by the Pyramid assembler and Illumina paired reads to closing gaps and extending contigs The repeat library was generated using Repeatmodeler (A.F.A. Smit, R. Hubley & P. Green http://repeatmasker.org). The Ribosomal RNA genes were identified using RNAmmer (Lagesen et. al., 2007 Nucleic Acids Res.) and transfer RNA's were identified with tRNAscan-SE (Lowe and Eddy, Nucleic Acids Res. 1997). Non-coding RNAs, such as microRNAs, were identified by sequence homology search of the Rfam database (Griffiths-Jones et. al., 2003 Nucleic Acids Res.). Repeats and predicted RNA's were then masked using RepeatMasker (A. Smit, R. Hubley & P. Green http://repeatmasker.org). Protein-coding genes were predicted using a combination of ab initio programs Snap (Korf, 2004 BCM Bioinformatics), Fgenesh (Salamov A., Solovyev V. 2000, Genome Res.) and Augustus (M. Stanke, et. al., 2008 Bioinformatics) and the annotation pipeline tool Maker (M. Yandell et. al., 2007 Genomc Research) which aligns mRNA, EST and protein information from same species or cross-species to aid in gene structure determination and modifications. A consensus gene set from the above prediction algorithms was generated, using a logical, hierarchical approach developed at the Genome institute. Gene product naming was determined by BER (http://ber.sourceforge.net). Our goal is to explore this WGS draft sequence of D. viviparus to better define proteins involved in nematode parasitism that impact health and disease and are relevant to both host-parasite relationships and basic biological processes. For information regarding this assembly or project, or any other GSC genome project, please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. For specific questions regarding the D. viviparus genome project contact Makedonka Mitreva (mmitreva@genome.wustl.edu) at Washington University School of Medicine. The National Human Genome Research Institute (NHGRI) of the National Institutes of Health (NIH) provided funds for this project. ##Genome-Assembly-Data-START## Current Finishing Status :: High-Quality Draft Assembly Method :: Newbler v. 2.6 Assembly Name :: D_viviparus_9.2.1.ec.pg Genome Coverage :: 12.20x Sequencing Technology :: 454 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..97522 /organism="Dictyocaulus viviparus" /mol_type="genomic DNA" /submitter_seqid="D_viviparus-1.0_Cont458" /strain="HannoverDv2000" /isolation_source="Cow lung" /host="cattle" /db_xref="taxon:29172" /chromosome="Unknown" /country="Germany" /lat_lon="51.00 N 9.00 E" /collection_date="Aug-2000" /collected_by="Drs. Thomas Schnieder and Christina Strube" assembly_gap 1270..1369 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 4061..8814 /locus_tag="DICVIV_11046" mRNA join(4061..4139,5088..5221,5281..5389,6065..6216, 6361..6444,6643..6788,7156..7222,7308..7406,7786..7959, 8776..8814) /locus_tag="DICVIV_11046" /product="GDSL-like protein" CDS join(4061..4139,5088..5221,5281..5389,6065..6216, 6361..6444,6643..6788,7156..7222,7308..7406,7786..7959, 8776..8814) /locus_tag="DICVIV_11046" /inference="protein motif:HMMPfam:IPR001087" /note="KEGG: hsa:151056 6.1e-46 PLB1, PLB, PLB/LIP, hPLB; phospholipase B1" /codon_start=1 /product="GDSL-like protein" /protein_id="KJH42944.1" /db_xref="InterPro:IPR001087" /translation="MLKPSATIPDDVNKVRPADIKAIAAIAAKTLGGKLHCDPEMLKP SATIPDDVNKVRPADIKAIAAIGDSFIVAARSTNFLDDPPDIFPGNSFISGGDETVEE HITVAKILRIFNPTVMGVSHGAGYGNMGFNVATGGATCKDVIVQAKELIRRMKEGYVN LNEDWKLIWIFIGTNDIGRVGCISDEESTSRDVYKSKLEEGISYLLYNLNRTIISIIP IWNPHLTVDARWLIDKGKRMECGHYSTRNRDVLAEEYRKVAYELQNEKRFDHKNFTVV VQGFMDEIRDAFRKKSGEYDKSFYGSDSFHLSKYGNAVMAKFLWNNLLEPVGNKTTNA DLGDDSVPIKCPTMERPYIQTLGNRM" assembly_gap 4783..4882 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 10494..12665 /locus_tag="DICVIV_11047" mRNA join(10494..10633,11498..11641,12506..12665) /locus_tag="DICVIV_11047" /product="hypothetical protein" CDS join(10494..10633,11498..11641,12506..12665) /locus_tag="DICVIV_11047" /inference="protein motif:HMMPfam:IPR021134" /codon_start=1 /product="hypothetical protein" /protein_id="KJH42945.1" /db_xref="InterPro:IPR021134" /translation="MTVNYMREAATARLGTFLKLLFRWRGSVWKTIWKELAIYLFFYF NLSVFYRFMLKGNSYGVIFELFVTHCRNLSRGAATVLSFALGFYVSQISDRDISERIR RRFPTYNHLVRMPFFHYSSRNYNLNSFIGGKILPSSSSISELLPL" gene 13407..19503 /locus_tag="DICVIV_11048" mRNA join(13407..13550,13773..13850,13913..13981,14170..14259, 14328..14399,15272..15355,15603..15725,16251..16337, 16440..16496,16965..17108,17732..17806,17942..17986, 18542..18629,18730..18753,19187..19503) /locus_tag="DICVIV_11048" /product="hypothetical protein" CDS join(13407..13550,13773..13850,13913..13981,14170..14259, 14328..14399,15272..15355,15603..15725,16251..16337, 16440..16496,16965..17108,17732..17806,17942..17986, 18542..18629,18730..18753,19187..19503) /locus_tag="DICVIV_11048" /inference="protein motif:HMMPfam:IPR021134" /note="KEGG: tet:TTHERM_00467740 0.0013 Protein kinase domain containing protein; K08857 NIMA (never in mitosis gene a)-related kinase" /codon_start=1 /product="hypothetical protein" /protein_id="KJH42946.1" /db_xref="InterPro:IPR021134" /translation="MTTSEKARIETEDIKRVYWMPIEWANQLLKKCYLKDQIDPYHYG ILCETILKYREMLHNLLSFDWINVPLVYTQVVHVCTVAYFGIICFASQSINEPESEMW INEFVIPVFAIYEFIFFVGWLKVAQVMLNPFGMDDDDFEIDMVIERNLQIGYSFVDSM YDKLPPLIYVDVAALPHTKASMALITKANPMVGSVANVDVPRAEQQVISKADVEIIRK LVGPRFGRRFHYDHSKYNNDMDRITNSPEEHDLGKKSSKSNSFLKKHIIQPNNTPNPS REHDTSVAKKVGSSYGIHGGDVIGEVQKKLERHKNALHTENQHDSLEKTQSPPSRDCK TTSAQSKILNPTQFSSELIEHKNSSKPFKLGTIRHSSLQHTQKTAPNTLRESSTTALT GGWGKSEEKILEKLSTTKFNSKDKISRNGRQLHGSTENRRITEEKKEILTLENPTEHS TPKLRTKLTARKKESRKKMTPKPESLLSSATPTSIKTWKSSHHLKKSK" gene 21073..22704 /locus_tag="DICVIV_11049" mRNA join(21073..21144,21284..21439,21627..21728,21781..21881, 21962..22055,22380..22489,22596..22704) /locus_tag="DICVIV_11049" /product="hypothetical protein" CDS join(21073..21144,21284..21439,21627..21728,21781..21881, 21962..22055,22380..22489,22596..22704) /locus_tag="DICVIV_11049" /inference="protein motif:HMMPfam:IPR000504" /inference="protein motif:HMMPfam:IPR000571" /note="KEGG: smm:Smp_123750 3.7e-16 arylformamidase" /codon_start=1 /product="hypothetical protein" /protein_id="KJH42947.1" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR000571" /translation="MANMNDRMSGAEYLASIYGTEKDKVNCSFFFKIGACRHGDKCSR THIIPTFSQTVLLKNLYHNPVIDMRQADACTKVGMMNKDEQQYFDEFFEEIFTEVNEK YGEIEEMEVCDNIGEHMIGNVYVKFAREEDAERCVKALDNRWFNGQAIYAELSPVTDF REACCRQYELGGCNKGAFCNFMHLKPISSDLRRKLYKGRRRSPPRYHGGKERDREMRS GRGRGDFGGGRDFGGGGGRRRSRSPRRKF" gene 25542..27957 /locus_tag="DICVIV_11050" mRNA join(25542..25634,25687..25809,26459..26541,26616..26705, 26872..27034,27469..27675,27859..27957) /locus_tag="DICVIV_11050" /product="HAD hydrolase, family IE" CDS join(25542..25634,25687..25809,26459..26541,26616..26705, 26872..27034,27469..27675,27859..27957) /locus_tag="DICVIV_11050" /note="KEGG: rcu:RCOM_0945550 8.7e-27 Cytosolic 5'-nucleotidase III, putative" /codon_start=1 /product="HAD hydrolase, family IE" /protein_id="KJH42948.1" /translation="MEKILKSLYFSSSSTGSILSDFRVGGKEKIMVVTDFDYTLTLRQ DDSGNKGCLTHEVFQTLKQKNGCTVEALQHELNKHYETALSNCSTKDDRISVQIDWWN ESHDIIVRSGVHCDQLPTIVRNSKIIWRKNVLHLIKLLEEMSVPLLIYSAGITDIIKE AIRQLIGYFPCNISIVANRMHFDEHGRLSGFTMPPLCSLTKTMVRLRGLAKEVDEIYK DRTNVILIGDSDEDAIMLNGWEERVFLKIRLVQDKISQPHSFDLVILGSDCHQLIDIV KYIIFPQQT" gene complement(28758..29579) /locus_tag="DICVIV_11051" mRNA complement(join(28758..28817,29108..29224,29523..29579)) /locus_tag="DICVIV_11051" /product="hypothetical protein" CDS complement(join(28758..28817,29108..29224,29523..29579)) /locus_tag="DICVIV_11051" /codon_start=1 /product="hypothetical protein" /protein_id="KJH42949.1" /translation="MPCEKKSGEKRESHCLDSQIHQTFRRPLKEKYSRYAMLTIKKQR CRNTKKINDCSKSESNDKSGKKHNLNKGTHDEP" assembly_gap 31850..31949 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 32964..33063 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 38692..43133 /locus_tag="DICVIV_11052" mRNA join(38692..38759,39253..39373,39874..39996,40214..40299, 40544..40633,40910..41075,42133..42233,42757..42859, 43014..43133) /locus_tag="DICVIV_11052" /product="HAD hydrolase, family IE" CDS join(38692..38759,39253..39373,39874..39996,40214..40299, 40544..40633,40910..41075,42133..42233,42757..42859, 43014..43133) /locus_tag="DICVIV_11052" /inference="protein motif:HMMTigr:IPR018012" /note="KEGG: oaa:100074606 5.9e-53 hypothetical protein LOC100074606; K01081 5'-nucleotidase" /codon_start=1 /product="HAD hydrolase, family IE" /protein_id="KJH42950.1" /db_xref="InterPro:IPR018012" /translation="MPALEVSSVVAFPTHLMIDENNRRLTGHDFDSLLNHPQVMMRDR NSVEKKLRAMMDDGKENLMVVSDFDYTLSKFEDTQGRRCWTTHGVFDNCVKQIDEDLA VKFQLLKDKYFPIEFDPNLTIEEKVPFMEEWWNISHQYIVSAKFHRATVEGFVRNAHI MLRDQTDQMIIQLDRLDVPLVVFSAGIGNIIEMYLKQELGEIPKNIHLISNMMNFDEQ DIVVSFSEPLIHTFCKNSSVIRKEAEFFHIFRERRNVVLLGDSMGDIHMDVGVEKKAL TLKIGFLNSNVNSLLDHYMEVYDVVLVQDQSMQIPHKILQAIANGHVKN" gene complement(43914..46848) /locus_tag="DICVIV_11053" mRNA complement(join(43914..44096,45143..45271,45515..45673, 45803..45934,46030..46176,46596..46650,46766..46848)) /locus_tag="DICVIV_11053" /product="hypothetical protein" CDS complement(join(43914..44096,45143..45271,45515..45673, 45803..45934,46030..46176,46596..46650,46766..46848)) /locus_tag="DICVIV_11053" /codon_start=1 /product="hypothetical protein" /protein_id="KJH42951.1" /translation="MQLFQINMSLMKKCCNCRSDLPESNGAGSSSVQCEKCQKNEAKY GKPTTCKFCQLPAAFHEEKCVYCSHSERKFGAPIPCANCKLRAAFTKDPKKLKPTLCR MCIIQARANKLTNLAGVTVSSHDHYSGHKRKREEKKKADKQAEPAKVPKRDPFSDSGE NVMLVQQLRDQISRLNSVISKKDAAMLEKDKKIATLQADLMTAERKHREKVDQLLKEK DEAIQMVIEKHRQASKQKGKIPYKRKQTPEPLSNVAIRCINNPEIPLHIRSGTMAWPR NQVIKLPISMAVNGFMICT" assembly_gap 49211..49310 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 54725..55132 /estimated_length=408 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 57806..64696 /locus_tag="DICVIV_11054" mRNA join(57806..57832,58194..58276,58835..58925,60514..60633, 61815..61888,63210..63342,63643..63770,63971..64058, 64589..64696) /locus_tag="DICVIV_11054" /product="phosphoprotein phosphatase 1 domain protein" CDS join(57806..57832,58194..58276,58835..58925,60514..60633, 61815..61888,63210..63342,63643..63770,63971..64058, 64589..64696) /locus_tag="DICVIV_11054" /inference="protein motif:HMMPfam:IPR004843" /note="KEGG: cel:R03D7.8 1.5e-31 hypothetical protein; K01090 protein phosphatase" /codon_start=1 /product="phosphoprotein phosphatase 1 domain protein" /protein_id="KJH42952.1" /db_xref="InterPro:IPR004843" /translation="MSAQRVGFEVSEKKLVTGQLSFPLLCRVLTNMELRIRKEVIELN SHEMPTYNKVEFIAGGNGHSLVKVDQMFLSGYENYKITHLLQHGPYVYDWRPFELVSL LSQATEIFEGESTILILRAPIVIIGDIRGQYQDLHRWLCIVDFPPRSKILFLGGVIDP EEPGSLDCLAFIAAMKVRFPHDVFLIRGMGETLPIVFHARFRGLNNSAVQSLVLSPKK KAATRLCNSLPIAARISNRILAVHSGLSHEGKGTYNLLSLDRFFPTGDSTSKFFVHTI VVYNSLP" assembly_gap 62417..62516 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 64861..64960 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 66167..66266 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 66417..66577 /locus_tag="DICVIV_14730" ncRNA 66417..66577 /ncRNA_class="other" /locus_tag="DICVIV_14730" /product="U1 spliceosomal RNA" /inference="nucleotide motif:Rfam:RF00003" /note="Rfam score 98.56" gene 67112..69010 /locus_tag="DICVIV_11056" mRNA join(67112..67184,67813..67871,67936..68046,68870..69010) /locus_tag="DICVIV_11056" /product="hypothetical protein" CDS join(67112..67184,67813..67871,67936..68046,68870..69010) /locus_tag="DICVIV_11056" /note="KEGG: cel:R03D7.8 2.1e-09 hypothetical protein; K01090 protein phosphatase" /codon_start=1 /product="hypothetical protein" /protein_id="KJH42953.1" /translation="MPPLARNLIFSQPTMKIRMYRDNTDTSQAVYGLGAVNRICREMG VKLVVRAHNPLQNGICWIGTRHKLISLWSAPAKNSNKVYPNPRAFQGAVINISSDFEI QVYTLQKQKQVEKSDETLRGENLLL" gene 72044..76865 /locus_tag="DICVIV_11057" mRNA join(72044..72109,72357..72453,72539..72595,72656..72782, 73049..73124,73190..73300,73369..73465,73524..73645, 73702..73788,74161..74397,75186..75275,75424..75522, 75586..75714,75771..75996,76142..76236,76294..76411, 76464..76544,76604..76654,76714..76865) /locus_tag="DICVIV_11057" /product="hypothetical protein" CDS join(72044..72109,72357..72453,72539..72595,72656..72782, 73049..73124,73190..73300,73369..73465,73524..73645, 73702..73788,74161..74397,75186..75275,75424..75522, 75586..75714,75771..75996,76142..76236,76294..76411, 76464..76544,76604..76654,76714..76865) /locus_tag="DICVIV_11057" /note="KEGG: edi:EDI_048910 1.4e-09 intracellular protein transport protein USO1" /codon_start=1 /product="hypothetical protein" /protein_id="KJH42954.1" /translation="MELPFVYIDPHEENEDIANVAAFLGQARRIIVNNAVSEEMKRAI FDLASEYIVDVRKYYQAKEKEALLVKRDADIDEKLHQVERELAEKERINNALRASIEE KKRNIKLSEITIKKSRNKTSDLFRQRKELEEDCKKLDAKVKESNSTLASSLQTAHKQR DRLQMLMEKSPRLAKQITERDAVNALEVRLEQLKSEQSDLKAEEERLRKELELQTATP LRVFIVNFAKITLRTLEMQEKLGEARKVYEQLKAEETERLKSGVCDHEFDASFLSTDY SFKKVNDHGNILRTELMRPAVVSKPVTPVDDGFSTPETLTSGSSSKSSVEPPQTTEED IIKARTNAVKSYVTQQSETVARNVESSKNGYKDTIYDENERESIYCLENADKSLGVMR TADKETVPSTLENNNIVEIADDDMDVNVSQGVIPEDFSDEDGEEQEVEDDGTIAVENE NDDVAINTNYILINWGVNSAERILSQESEDSTAVEGISRMKIDPINTLKIAQMSETSQ SILGSDNREKSPISQKFHENSAGRRASMSHRQGCSSQTSENVFNGGSPSPCVDASQEA GAFFSNLLDQPPSPIQDGIPFNFGSGGITEEIDPSVVLNISTHSNDPGGDFLLLMENE KRERDRRSEGSSSAAEFSFSMFGTAADPATSGLGGEFAFDFDAPSQCNERIDSTTFQF NFSEGSNDQEQNNNDGGFNFFDF" assembly_gap 78773..78872 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 79865..79969 /estimated_length=105 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(80600..86514) /locus_tag="DICVIV_11058" mRNA complement(join(80600..80677,80745..81404,81580..81716, 81833..81879,83866..84254,84702..84927,86498..86514)) /locus_tag="DICVIV_11058" /product="nematode cuticle collagen domain protein" CDS complement(join(80600..80677,80745..81404,81580..81716, 81833..81879,83866..84254,84702..84927,86498..86514)) /locus_tag="DICVIV_11058" /inference="protein motif:HMMPfam:IPR002486" /inference="protein motif:HMMPfam:IPR008160" /note="KEGG: isc:IscW_ISCW014473 3.6e-37 basement membrane collagen, putative" /codon_start=1 /product="nematode cuticle collagen domain protein" /protein_id="KJH42955.1" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /translation="MCVYDRSAIMKERTTSSLVDLYEMFFVGSHLDSISIKIAYLFYL HVGIVIAVLIFCGSMVILWQESDKWKKYTDYICHHMSRQRRRARRRLRKSERSTRSGI SDRSRRSHSHKSSRSHKSSRSEQSTRSAHSNRSHKSSHSHKSSRSHKSSRSEQSTRSA HSNRSHKSSHSHKSNRSQPSTASHRSNRSHRSSRSNRSGRSNRSSLSERVQEERNDEG KKKNEPSLFMSKVIVIGSGVTLAFIVCSLVTMVSLLKDIADLQFEVEVGMDEFKEIAE DTWSHILTKHMNTAGTTDAMQNFAKIVGRRPRAVGFPEQCNCGAKSTGCPPGPPGPPG PKGIPGEPGVDGEDGRPGAPGIAVAITHDIPGGCITCPAGPPGPRGPPGEQGPPGPPG IFGQRGPPGLPGPMGEIGPQGDEGQPGIPGRPGPPGPPGEPGTQYTQGMPGHPGPPGQ RGPPGEPGQQGTPGSDGKPGPQGRPGHPGKDGNPGRNGQPGQRGENGKVGADAEYCPC PPRGRKRRF" assembly_gap 90927..91063 /estimated_length=137 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(93847..95077) /locus_tag="DICVIV_11059" mRNA complement(join(93847..93921,93994..94407,94512..94754, 94946..95077)) /locus_tag="DICVIV_11059" /product="nematode cuticle collagen domain protein" CDS complement(join(93847..93921,93994..94407,94512..94754, 94946..95077)) /locus_tag="DICVIV_11059" /inference="protein motif:HMMPfam:IPR002486" /inference="protein motif:HMMPfam:IPR008160" /note="KEGG: isc:IscW_ISCW022619 1.9e-34 glycine rich secreted cement protein, putative K06237" /codon_start=1 /product="nematode cuticle collagen domain protein" /protein_id="KJH42956.1" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /translation="MFVVGFASTVALVTTIACLISIVIIVNDINDLRDDVLHTVGDFK NVADNTWNQIIALHVHPTTDHDAPPIFASLFKRHKRNGFPPECNCGPLPENCPAGPPG PPGSPGRPGFDGEDGSDGRPGVKGIALAVTQHIPGGCITCPAGPPGPPGARGNVGAPG RDGERGCEGPQGEPGIPGPKGPTGEPGLAGIPGIAGRDGYPGAPGCRGLPGRPAPRGD IGPKGYPGSDGKPGERGPPGERGPAGPSGRPGNRGNQGPPGADGIPGIPGRPGSDQGY CPCPPHGRLRF" CONTIG join(AZAF01012526.1:1..1269,gap(100),AZAF01012527.1:1..3413, gap(100),AZAF01012528.1:1..26967,gap(100),AZAF01012529.1:1..1014, gap(100),AZAF01012530.1:1..16147,gap(100),AZAF01012531.1:1..5414, gap(408),AZAF01012532.1:1..7284,gap(100),AZAF01012533.1:1..2344, gap(100),AZAF01012534.1:1..1206,gap(100),AZAF01012535.1:1..12506, gap(100),AZAF01012536.1:1..992,gap(105),AZAF01012537.1:1..10957, gap(137),AZAF01012538.1:1..6459) //