LOCUS KJ202536 652 bp DNA linear VRT 07-MAY-2014
DEFINITION Trimma nasa voucher T00477 cytochrome oxidase subunit 1 (COI) gene,
partial cds; mitochondrial.
ACCESSION KJ202536
VERSION KJ202536.1
KEYWORDS BARCODE.
SOURCE mitochondrion Trimma nasa
ORGANISM Trimma nasa
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae;
Gobiinae; Trimma.
REFERENCE 1 (bases 1 to 652)
AUTHORS Winterbottom,R., Hanner,R.H., Burridge,M. and Zur,M.
TITLE A cornucopia of cryptic species - a DNA barcode analysis of the
gobiid fish genus Trimma (Percomorpha, Gobiiformes)
JOURNAL Zookeys 381, 79-111 (2014)
PUBMED 24624015
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 652)
AUTHORS Winterbottom,R., Hanner,R., Burridge,M. and Zur,M.
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2014) Department of Natural History, Royal
Ontario Museum, 100 Queen's Park, Toronto, Ontario M5S 2C6, Canada
FEATURES Location/Qualifiers
source 1..652
/organism="Trimma nasa"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/specimen_voucher="T00477"
/db_xref="BOLD:RWGOB095-06.COI-5P"
/db_xref="taxon:1402060"
/country="New Caledonia"
/lat_lon="22.3333 S 167.006 E"
/PCR_primers="fwd_seq:
tgtaaaacgacggccagttctcaaccaaccacaaagacattgg, rev_seq:
caggaaacagctatgactagacttctgggtggccaaagaatca"
/PCR_primers="fwd_seq:
tgtaaaacgacggccagttctcaaccaaccacaargayatygg, rev_seq:
caggaaacagctatgactagacttctgggtggccraaraayca"
/PCR_primers="fwd_seq:
tgtaaaacgacggccagtattcaaccaatcataaagatattgg, rev_seq:
caggaaacagctatgactaaacttctggatgtccaaaaaatca"
/PCR_primers="fwd_seq:
tgtaaaacgacggccagttctcaaccaacca<i>aa<i>ga<i>at<i>gg,
rev_seq:
caggaaacagctatgactagacttctgggtg<i>cc<i>aa<i>aa<i>ca"
gene <1..>652
/gene="COI"
CDS <1..>652
/gene="COI"
/codon_start=2
/transl_table=2
/product="cytochrome oxidase subunit 1"
/protein_id="AHY80922.1"
/translation="LYLVFGAWAGMVGTALSLLIRAELNQPGALLGDDQIYNVIVTAH
AFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVE
AGAGTGWTVYPPLASNLAHAGASVDLTIFSLHLAGISSILGAINFITTIFNMKPPAMS
QYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTSFFDPAGGGDPILYQHL"
BASE COUNT 149 a 181 c 123 g 199 t
ORIGIN
1 cctttatttg gtattcggtg catgagctgg gatggtggga accgccctca gtcttcttat
61 tcgcgctgag ctaaaccaac ccggggcctt actaggtgat gatcaaattt ataatgtcat
121 tgtcactgca catgcctttg taataatctt ctttatagta ataccaatta taatcggggg
181 atttgggaac tgattaatcc cactcataat tggagcccca gatatagctt tccctcgaat
241 gaataacata agcttttggc ttcttccacc ctctttttta cttctcctag cctcttcggg
301 agtcgaagca ggagctggaa caggctggac tgtctacccc cccctcgcta gcaacctagc
361 tcatgcagga gcttctgttg acctgacaat tttctccctg cacctagcgg ggatttcgtc
421 aattctaggg gccattaatt ttattaccac aatctttaac ataaaacccc ccgcaatatc
481 acagtaccag accccgttgt ttgtctgggc tgttttaatc accgcagtcc ttctccttct
541 ctcccttccc gttcttgcag ccggcatcac catacttctg actgaccgaa acctaaatac
601 atcttttttt gaccccgcag gggggggaga tcctattctt taccaacacc ta
//