LOCUS KJ202521 651 bp DNA linear VRT 07-MAY-2014
DEFINITION Trimma taylori voucher T00733 cytochrome oxidase subunit 1 (COI)
gene, partial cds; mitochondrial.
ACCESSION KJ202521
VERSION KJ202521.1
KEYWORDS BARCODE.
SOURCE mitochondrion Trimma taylori (yellow cave goby)
ORGANISM Trimma taylori
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae;
Gobiinae; Trimma.
REFERENCE 1 (bases 1 to 651)
AUTHORS Winterbottom,R., Hanner,R.H., Burridge,M. and Zur,M.
TITLE A cornucopia of cryptic species - a DNA barcode analysis of the
gobiid fish genus Trimma (Percomorpha, Gobiiformes)
JOURNAL Zookeys 381, 79-111 (2014)
PUBMED 24624015
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 651)
AUTHORS Winterbottom,R., Hanner,R., Burridge,M. and Zur,M.
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2014) Department of Natural History, Royal
Ontario Museum, 100 Queen's Park, Toronto, Ontario M5S 2C6, Canada
FEATURES Location/Qualifiers
source 1..651
/organism="Trimma taylori"
/organelle="mitochondrion"
/mol_type="genomic DNA"
/specimen_voucher="T00733"
/db_xref="BOLD:RWGOB229-07.COI-5P"
/db_xref="taxon:1402041"
/country="Palau"
/lat_lon="6.9125 N 134.127 E"
/PCR_primers="fwd_seq:
tgtaaaacgacggccagttctcaaccaaccacaaagacattgg, rev_seq:
caggaaacagctatgactagacttctgggtggccaaagaatca"
/PCR_primers="fwd_seq:
tgtaaaacgacggccagttctcaaccaaccacaargayatygg, rev_seq:
caggaaacagctatgactagacttctgggtggccraaraayca"
/PCR_primers="fwd_seq:
tgtaaaacgacggccagtattcaaccaatcataaagatattgg, rev_seq:
caggaaacagctatgactaaacttctggatgtccaaaaaatca"
/PCR_primers="fwd_seq:
tgtaaaacgacggccagttctcaaccaacca<i>aa<i>ga<i>at<i>gg,
rev_seq:
caggaaacagctatgactagacttctgggtg<i>cc<i>aa<i>aa<i>ca"
gene <1..>651
/gene="COI"
CDS <1..>651
/gene="COI"
/codon_start=1
/transl_table=2
/product="cytochrome oxidase subunit 1"
/protein_id="AHY80907.1"
/translation="LYLVFGAWAGMVGTGLSLLIRAELNQPGALLGDDQIYNVIVTAH
AFVMIFFMVMPVMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVE
AGAGTGWTVYPPLASNLAHAGASVDLTIFSLHLAGISSILGAINFITTILNMKPPAMS
QYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTSFFDPTGGGDPILYQHL"
BASE COUNT 152 a 180 c 122 g 197 t
ORIGIN
1 ctatacttag tatttggcgc ttgggctggg atggttggga ccggcttaag tcttcttatc
61 cgagccgagc taaatcaacc tggggccctt cttggggatg atcagattta taacgtaatc
121 gtaactgctc atgcatttgt tataattttc ttcatagtta tgcctgtaat aattggagga
181 tttggtaatt gattgattcc cctaataatc ggggcccccg atatggcatt cccccgcata
241 aataatataa gcttttgact tctcccccca tcctttttac ttcttcttgc ctcctcaggg
301 gtagaagcag gagccggcac aggatgaact gtttaccccc ctctcgcaag taaccttgcc
361 cacgcagggg cctctgtaga cctaacaatc ttctccctcc acctagcggg tatctcttca
421 attttagggg ctattaattt tattaccaca attctaaaca taaaaccccc agcaatatca
481 caatatcaaa ctcccctttt cgtgtgggcc gttctaatca ccgccgtcct ccttcttctc
541 tccctaccgg tgttagcagc aggaatcacc atgcttttaa cggatcgcaa cctgaataca
601 tcattttttg accctactgg agggggagac cccatccttt accaacacct c
//