LOCUS KA330162 3439 bp mRNA linear TSA 14-AUG-2012
DEFINITION TSA: Capra hircus a14390;73.Cahiskin mRNA sequence.
ACCESSION KA330162
VERSION KA330162.1
DBLINK BioProject: PRJNA170226
BioSample: SAMN01086905, SAMN01086906, SAMN01086907
Sequence Read Archive: SRR520145, SRR520147, SRR520148
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Capra hircus (goat)
ORGANISM Capra hircus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
Pecora; Bovidae; Caprinae; Capra.
REFERENCE 1 (bases 1 to 3439)
AUTHORS Xu,T., Liu,D., Guo,X., Wang,H. and Gao,X.
TITLE De novo transcriptome assembly and differential gene expression
profiling of three Capra hircus skin types during anagen phase of
the hair growth cycle
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3439)
AUTHORS Xu,T., Liu,D., Guo,X., Wang,H. and Gao,X.
TITLE Direct Submission
JOURNAL Submitted (27-JUL-2012) The Key Laboratory of Mammalian
Reproductive Biology and Biotechnology of the Ministry of
Education, Inner Mongolia University, Da Xue Xi Jie, Hohhot, Inner
Mongolia 010021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: Inchworm (Trinity) 20111126
Assembly Name :: Goat anagen skin transcriptome assembly
Coverage :: 240
Sequencing Technology :: Illumina HiSeq
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3439
/organism="Capra hircus"
/mol_type="mRNA"
/db_xref="taxon:9925"
/tissue_type="skin"
BASE COUNT 584 a 1013 c 1119 g 723 t
ORIGIN
1 cttcgggcct cccccacgat ggagaaggca ggtggaacat catacgtgtg cttggtcctg
61 ggtgagggtc cagctgggag ggcccctggg tctgtctgag cagctgaccc tccctccctc
121 cccagtgcca cgtgcccgcc cgggcatctg gggcagacag agggtctgcg ccccagagca
181 gcaggaggtg ggggacctgt tcaaatcacg aagtcatcat ggtccacggg actgaaggca
241 gaggctcgca ggatgtccag ggagtttacc aggatcaggg tccccgtgag gtgcttccag
301 cgcttggtga tggggttctt catcttgtcc aggccgatgt gcagttcctg gatgacatcc
361 cggtagctgt cccctatctg gtggctccag gtgaggagaa agtcgtaggc gggcttccac
421 atggcctcac tgtccaccac cccgttcctg tcccggtggg gagactcgta cgcatccatc
481 tgctgcttgg acaccttggc gagcttctcg gccagctccc gccagcgctg tgccacctcg
541 actgctgtgg tcaggagcac gaagtcttgg atgagtctga ccaccaggcc ctggcagtcc
601 atcttcagta aggccatcat gagctccttc tggaaggact tccggtcttt gttgtccgtg
661 ttgttgcagt cttccttcag cttctccagg acggacgcta cccgctcggg ctcgctgtcc
721 agctcggccc ggcagaagaa ggtgagcggc aggtccccgt aacccagggc gtcagcgaag
781 gagcgccagc tgctgacatt ctccatgagc agcgtgcgga cggaggcgta gatgtaggtg
841 aggaacttgc agggccgcag gatctgctcc agcagcacgg acgtgctcag ctcgggcccc
901 gccagcaggc tgggccgcgc cttgcccacc accagcacgt tcttggcgtg caccaggccc
961 accctgccct ggtggtagcc gatgtaccac tccttcgtcc aaagctgccc cttgagccgg
1021 atcttctcct cgctgagcag ggcgatggcg tcgcccttct tgtactccag caggtagtgg
1081 ttcttgctct gccgcaccac cgtcttgagt agcttgccga acttgaggct ggacacggga
1141 cggtcctgaa acgttgggta cttggtggtg gcggccagcg gggacaggat aatcttcccc
1201 acctcgttct tcttgaggaa gcgtctctgc ccggatggct tgatggcgct tttggggggc
1261 ggctgggggg tctgtacaca aaactgggtg aggatggcct cctggtcatc tttcacctga
1321 acccgcagcg tgaagtcgga gagctcgctg gggttctggc atgtgatggg gaagatgagg
1381 cggctaacct tgcccagctt cacctggaac cctctcacgg ccttggcctg atcgctggct
1441 ttgacctcgt agttggtcat gttggaaaac acacagactt ggagatcctg gggcctggac
1501 agaacgaact ggtgcttgcc ccagagttgc agggccactg gggccggggt aggggcctgg
1561 cgggtgacct cgctgaccag gagggtcttt ggggcacagt catgaccaaa aatggtcacc
1621 actgtcttga aggatgggtg gatgtgtttg gggccgtaga gacccacggt gactttttta
1681 ttgatgaagt cccagaccgt ggaagggtag aggatgttcg ggccgtgggc gacgatggcc
1741 aggtacatac agggctccag gttgtccagc tggacctgga ctgtgtcccc gtagctgtag
1801 gcgagaggga tggggacgta gggcccctct ttggagtcgc tcctcaggca ctggaggccc
1861 accgtgcttt tgctgaaaat gtcgctcttt acctcggctg acaccttcat ctccaggatg
1921 aggtgggtct tcacctccag ggtgctcagc ttcacctcca gcactgggct gatggagctg
1981 caccggtcgc tgttgagctc cagcgggggg tccagcagag ccttcatgga gacctgctgc
2041 atctccccgg gagccacgtg gccctcgggc acgtggatgc tgatgttggc gtcaggcagc
2101 tggacggcgc cccctgagct gtccagctta cacacgatgt tcgtctctac cgcctgggtc
2161 tggccccacc cagggctctg gcccagaagg tccaggtcgt ggcaagaccg ggccagcttc
2221 cggtggctca gccaggcagc ccggaagtcc tcgcggctct ggaactgctc gggggctggc
2281 gatttcaagc ccgtgaaaaa ccctgaggac gcgggcgcat cggacttggc ctggagcacg
2341 gagagctccg agaggctgta ggaacgcttg cttcggaaga aagggttgtc ccgcttgacg
2401 ggcggctccg cggggaggcg gccggcggcc ggcagctcat cgaagatgtt gccggtgctg
2461 ttggtggtcg ccgagctgga ctcggtgaag gaggatgtcc ccgtgtcgaa gaggagcaag
2521 tccacggcgc ttctgggcat cagctcgtcc acgctgggca tcgccgggat gttcccgttg
2581 agaaatgggt tcgtctggac tccgctccag aaaggattat tactgtaggc tttgctggat
2641 tccttcttgg catccgtcca ccccccgagc aaatcgagct ccttggcgac ttcatccggg
2701 ctgtctggaa gattgtcaat catcccgctg tcgctgaggg tggagttccg gtagtttaag
2761 ggctgcacgt aggaggaggg gatgtagccc atctccgtgg tgttgtgcgc ataccaccac
2821 tccccgcccg acgtgtccag gacatacagg tggtcgccct tggagaactt gagggtggtg
2881 aagttggttg ggcagtagtc cttgattgca atcacctcct tcgcgtttcc aaagggtgtg
2941 ggattgtcca cgagcaaggc actgggagaa ggcactttaa catcattaaa gctcgattct
3001 gaaaaccctt cgctgaggtc aatcagggtc ccctcggact tgcaccgcgg gaggccgcta
3061 gagttggcag cccggatgcg ctgagccgcc attctgaaac gcttttcccc aggcggatgg
3121 gctaaggttt catatttctc cctccagtta ttccagcgag cgtggaagct gctgtctcag
3181 gcaaccatgc tgcacgacgg tgtcagcttg gcaatgtgct tcttcctgtc accggcccca
3241 gctccctgac gtcaaagccc cagccccagg acgcggcctt ctgtccagag aagggagacg
3301 ctggctcgca ttgcgtcccg cgggctcctg cggttctccc cgcggtctgg gagcgcgccc
3361 gggccggcac cgcgcgccga tccgcgggaa ccaccgcgcg gaagcagcta gttgccggga
3421 cgcaatgcga gccagcgtc
//