LOCUS JX290266 1535 bp RNA linear VRL 22-SEP-2012
DEFINITION HIV-1 isolate 10RU6803 from Russia pol protein (pol) gene, partial
cds.
ACCESSION JX290266
VERSION JX290266.1
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE 1 (bases 1 to 1535)
AUTHORS Totmenin,A.V., Baryshev,P.B., Bogatchev,V.V. and Gashnikova,N.M.
TITLE Molecular epidemiology of HIV-1 in Novosibirsk region, Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1535)
AUTHORS Totmenin,A.V., Baryshev,P.B., Bogatchev,V.V. and Gashnikova,N.M.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2012) Department of Retroviruses, State Research
Center of Virology and Biotechnology VECTOR, Koltsovo, Novosibirsk
region 630559, Russia
FEATURES Location/Qualifiers
source 1..1535
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="10RU6803"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Russia: Novosibirsk"
/collection_date="2010"
/note="subtype: CRF02_AG"
gene <1..>1535
/gene="pol"
CDS <1..>1535
/gene="pol"
/codon_start=1
/product="pol protein"
/protein_id="AFR77719.1"
/translation="FFRETLAFQQREARKFSSEQTRTNSPTSREREDGTNSPTSRESG
DGGRDNLLSAAGAEGQGEISSFSFPQITLWQRPLVTVRIEGQLIEALLDTGADDTVLE
DIDLPGKWKPKMIGGIGGFIKVRQYDQILMEICGKKAIGTVLVGPTPVNIIGRNMLTQ
IGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIG
PENPYNTPIFAIKKKDSSRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVL
DVGDAYFSVPLYEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPSIFQASMTKI
LEPFRRKNPEIVIYQYVDDLYVGSDLEIGQHRAKIEELRAHLLNWGFTTPDKKHQKEH
PFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLL
RGAKALTDIVTLTEEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQDQWTYQI
YQEP"
BASE COUNT 583 a 268 c 345 g 339 t
ORIGIN
1 ttttttaggg agactttggc cttccaacaa agggaggcca ggaaattttc ctcagagcag
61 accagaacca acagccccac cagcagagag cgtgaggatg gaaccaacag ccccaccagc
121 agagagagtg gggatggggg aagagataac ctcctctccg cagcaggagc cgagggacaa
181 ggggaaatat cctcctttag cttccctcaa atcactcttt ggcaacgacc tttagtcaca
241 gtaagaatag agggacagct aatagaagcc ctattagaca caggagcaga tgatacagta
301 ttagaagaca tagatttacc aggaaaatgg aaaccaaaaa tgataggggg aattggaggc
361 tttatcaaag taagacagta tgatcagata cttatggaaa tctgtggaaa aaaggccata
421 ggtacagtat tagtaggacc tacacctgtc aatataattg ggcgaaatat gttaacccag
481 attggttgta ctttaaattt tccaataagt cctattgaaa ctgtaccagt aaaattaaag
541 ccaggaatgg atggcccaaa ggttaaacaa tggccattga cagaagaaaa aataaaagca
601 ttaacagaca tttgtacaga aatggaaaag gaaggaaaaa tttcaaaaat tggacctgaa
661 aatccataca atactccaat atttgccata aagaaaaaag atagtagtag gtggagaaaa
721 ttagtagatt tcagagaact caataagaga actcaggact tctgggaggt ccaattagga
781 atacctcatc ctgcgggatt aaaaaagaac aaatcagtaa cagtactaga tgtaggagat
841 gcatattttt cagtaccctt atatgaagac tttagaaagt atactgcatt cactatacct
901 agtgtaaata atgaaacacc agggattaga tatcagtaca atgtgcttcc acagggatgg
961 aaagggtcac catcaatatt tcaggcaagc atgacaaaaa tcttagagcc ctttagaaga
1021 aaaaatccag agatagtaat ctaccaatat gtggatgatt tgtatgtagg gtctgactta
1081 gaaatagggc agcatagagc aaaaatagag gagttaagag ctcatctatt gaattgggga
1141 tttactacac cagacaaaaa gcatcagaaa gaacatccat ttctctggat gggatatgaa
1201 ctccatcctg acaaatggac agtccagcct atacagctgc cagacaaaga cagctggact
1261 gtcaatgata tacagaaatt agtgggaaaa ctaaattggg caagtcagat ttatccaggg
1321 attaaagtga ggcaattgtg taaactcctc aggggagcca aagcactgac agatatagtg
1381 acactgactg aggaagcaga attagaattg gcagagaaca gagagattct aaaagaaccg
1441 gtgcatgggg tatattatga cccagcaaaa gatttagtag cagaaataca gaaacaagga
1501 caagaccaat ggacatatca aatttatcaa gagcc
//