LOCUS JX290260 1499 bp RNA linear VRL 22-SEP-2012 DEFINITION HIV-1 isolate 10RU6498 from Russia pol protein (pol) gene, partial cds. ACCESSION JX290260 VERSION JX290260.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 1499) AUTHORS Totmenin,A.V., Baryshev,P.B., Bogatchev,V.V. and Gashnikova,N.M. TITLE Molecular epidemiology of HIV-1 in Novosibirsk region, Russia JOURNAL Unpublished REFERENCE 2 (bases 1 to 1499) AUTHORS Totmenin,A.V., Baryshev,P.B., Bogatchev,V.V. and Gashnikova,N.M. TITLE Direct Submission JOURNAL Submitted (08-JUL-2012) Department of Retroviruses, State Research Center of Virology and Biotechnology VECTOR, Koltsovo, Novosibirsk region 630559, Russia FEATURES Location/Qualifiers source 1..1499 /organism="Human immunodeficiency virus 1" /mol_type="genomic RNA" /isolate="10RU6498" /host="Homo sapiens" /db_xref="taxon:11676" /country="Russia: Novosibirsk" /collection_date="2010" /note="subtype: CRF02_AG" gene <1..>1499 /gene="pol" CDS <1..>1499 /gene="pol" /codon_start=1 /product="pol protein" /protein_id="AFR77713.1" /translation="FFRETLAFQQREARKFSSEQTRTISPTSRERGDGGRDNLLSAAG AEGQGAISSFSFPQITLWQRPLVTVRIEGQLIEALLDTGADDTVLEDINLPGKWKPKM IGGIGGFIKVRQYDQILMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPI ETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPIFAI KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLY EDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRRKNPEIV IYQYMDDLYVGSDLEIGQHRAKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPD KWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVTQLCKLLRGAKALTDIVTL TEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQDQWTYQIYQEP" BASE COUNT 571 a 262 c 327 g 338 t ORIGIN 1 ttttttaggg agactttggc cttccaacaa agggaggcca ggaaattttc ctcagagcag 61 accagaacca tcagccccac cagcagagag cgtggggatg ggggaagaga taacctcctc 121 tccgcagcag gagccgargg acaaggggct atatcctcct ttagcttccc tcaaatcact 181 ctttggcaac gacccttagt cacagtaaga atagagggac agctaataga agccctatta 241 gacacaggag cagatgatac agtattagaa gacataaatt taccaggaaa atggaaacca 301 aaaatgatag ggggaattgg aggctttatc aaagtaagac agtatgatca gatacttatg 361 gaaatctgtg gaaaaaaggc cataggtaca gtattagtag gacctacacc tgtcaatata 421 attgggcgaa atatgttaac ccagattggt tgtactttaa attttccaat aagtcctatt 481 gaaactgtac cagtaaaatt aaagccagga atggatggcc caaaggttaa acaatggcca 541 ttgacagaag aaaaaataaa agcattaaca gacatttgta cagaaatgga aaaggaagga 601 aaaatttcaa aaattggacc tgaaaatcca tacaatactc ccatatttgc cataaagaaa 661 aaagatagta ctaaatggag aaaattagtg gatttcagag aactcaataa gagaactcag 721 gacttctggg aggtccaatt aggaatacct catccagcgg gattaaaaaa gaaaaaatca 781 gtaacagtac tagatgtagg agatgcatat ttttcagtac ccttatatga agactttaga 841 aagtataccg cattcactat acctagtgta aataatgaaa caccagggat tagatatcag 901 tacaatgtgc ttccacaggg atggaaaggg tcaccagcaa tatttcaggc aagcatgaca 961 aaaatcttag agccctttag aagaaaaaat ccagagatag taatttacca atatatggat 1021 gatttgtatg tagggtctga cttagaaata gggcagcata gagcaaaaat agaggagtta 1081 agagctcatc tattgagttg gggatttact acaccagaca aaaagcatca gaaagaacct 1141 ccatttcttt ggatgggata tgaactccat cctgacaaat ggacagtcca gcctatacag 1201 ctgccagaca aagacagctg gactgtcaat gatatacaga aattagtggg aaaactaaat 1261 tgggcaagtc agatttatcc agggattaaa gtgacacaat tgtgtaaact cctcagggga 1321 gccaaagcac tgacagatat agtgacactg actgaggaag cagaattaga attggcagag 1381 aacagagaga ttctaaaaga accggtgcat ggagtatatt atgacccatc aaaagattta 1441 gtagcagaaa tacagaaaca aggacaagac caatggacat atcaaattta tcaagagcc //