LOCUS JX290248 987 bp RNA linear VRL 22-SEP-2012 DEFINITION HIV-1 isolate 11RU21n from Russia pol protein (pol) gene, partial cds. ACCESSION JX290248 VERSION JX290248.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 987) AUTHORS Totmenin,A.V., Baryshev,P.B., Bogatchev,V.V. and Gashnikova,N.M. TITLE Molecular epidemiology of HIV-1 in Novosibirsk region, Russia JOURNAL Unpublished REFERENCE 2 (bases 1 to 987) AUTHORS Totmenin,A.V., Baryshev,P.B., Bogatchev,V.V. and Gashnikova,N.M. TITLE Direct Submission JOURNAL Submitted (08-JUL-2012) Department of Retroviruses, State Research Center of Virology and Biotechnology VECTOR, Koltsovo, Novosibirsk region 630559, Russia FEATURES Location/Qualifiers source 1..987 /organism="Human immunodeficiency virus 1" /mol_type="genomic RNA" /isolate="11RU21n" /host="Homo sapiens" /db_xref="taxon:11676" /country="Russia: Novokuznetsk" /collection_date="2011" /note="subtype: B" gene <1..>987 /gene="pol" CDS <1..>987 /gene="pol" /codon_start=1 /product="pol protein" /protein_id="AFR77701.1" /translation="FFREDLAFPQGEAREFPSEQTRANSPTRGEFQVWGGDNNSLSEA GAERQGQGQGTVSLSFPQITLWQRPVVTIKIGGQLKEALLDTGADDTVVEDMYLPGRW KPKMIGGIGGFIKVRQYDQVPIEICGQKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFP ISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTP VFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFS VPLDPDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEP" BASE COUNT 368 a 177 c 220 g 222 t ORIGIN 1 ttttttaggg aagatctggc cttcccacaa ggggaggcca gggaatttcc ttcagagcag 61 accagagcca acagccccac cagaggagag tttcaggttt ggggaggaga caacaactcc 121 ctctcagaag caggagcaga aagacaggga cagggacaag gaactgtatc ccttagcttc 181 cctcagatca ctctttggca acgacccgtc gtcacaataa agataggggg gcaactaaag 241 gaagctctat tagacacagg agcagatgat acagtagtag aagacatgta tttgccagga 301 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat 361 caggtaccca ttgaaatctg tgggcaaaag gctataggta cagtattagt aggacctaca 421 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc 481 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagagtt 541 aaacaatggc cactgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg 601 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 661 gctataaaga aaaaagacag tactaaatgg agaaaattag tagattttag agaacttaat 721 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacacccagc agggttaaaa 781 aagaataaat cagtgacagt actagatgtg ggtgatgcat atttttcagt tcccttagat 841 ccagatttca gaaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg 901 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 961 agtagcatga caaaaatctt agagcca //