LOCUS JX290218 1371 bp RNA linear VRL 22-SEP-2012
DEFINITION HIV-1 isolate 10RU6587 from Russia pol protein (pol) gene, partial
cds.
ACCESSION JX290218
VERSION JX290218.1
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE 1 (bases 1 to 1371)
AUTHORS Totmenin,A.V., Baryshev,P.B., Bogatchev,V.V. and Gashnikova,N.M.
TITLE Molecular epidemiology of HIV-1 in Novosibirsk region, Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1371)
AUTHORS Totmenin,A.V., Baryshev,P.B., Bogatchev,V.V. and Gashnikova,N.M.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2012) Department of Retroviruses, State Research
Center of Virology and Biotechnology VECTOR, Koltsovo, Novosibirsk
region 630559, Russia
FEATURES Location/Qualifiers
source 1..1371
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="10RU6587"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Russia: Novosibirsk"
/collection_date="2010"
/note="subtype: A1"
gene <1..>1371
/gene="pol"
CDS <1..>1371
/gene="pol"
/codon_start=1
/product="pol protein"
/protein_id="AFR77671.1"
/translation="FFRENLAFQQREARKFSSEQTRAISPTSRELWDGGRDDLLPETG
TERQGTVSSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDINLPGKWKPKM
IGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPI
ETVPVALKPGMDGPKVKQWPLTEEKIKALTDICKEMEKEGKISKIGPENPYNTPVFAI
KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
ENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQXSMTKILEPFRLKNPEIV
IYQYMDDLYVGSDLEIGQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPD
KWTVQPIVLPNKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIVTL
TEEAELE"
BASE COUNT 517 a 235 c 297 g 320 t
ORIGIN
1 ttttttaggg aaaatttggc cttccagcaa agggaggcca ggaaattttc ctcagagcag
61 accagagcca tcagccccac cagcagagaa ctttgggatg ggggaagaga tgacctcctc
121 cctgaaacag gaacagaaag acagggaaca gtatcctcct tcaatttccc tcaaatcact
181 ctttggcaac gaccccttgt cacaataaaa ataggaggac agctaaaaga agctctatta
241 gatacaggag cagatgatac agtattagaa gacataaatt tgccaggaaa atggaaacca
301 aaaatgatag ggggaattgg aggttttatc aargtaagac agtatgatca gatacttata
361 gaaatttgtg gaaaaaaggc tataggtacg gtattagtag gacctacccc tgtcaacata
421 attggaagaa atatgttgac tcagattggt tgcactttaa attttccaat aagtcctatt
481 gaaactgtac cagtagcatt aaagccagga atggatggcc caaaggttaa acaatggcca
541 ttaacagaag agaaaataaa agcattaaca gacatttgta aggagatgga aaaggaagga
601 aaaatttcaa aaattgggcc tgaaaatcca tacaatactc cagtatttgc cataaagaaa
661 aaggacagca ctaagtggag gaaattagta gatttcaggg agctcaataa aagaactcag
721 gacttttggg aagttcaatt aggaataccc catccagcgg gtttaaaaaa gaaaaaatca
781 gtaacagtac tagatgtggg ggatgcatat ttttcagttc ctttagatga aaacttcaga
841 aagtatactg cattcactat tccaagtata aacaatgaga caccagggat cagatatcag
901 tacaatgtac ttccacaggg atggaaagga tcaccatcaa tattccagwg tagcatgaca
961 aaaatcttag agccctttag attaaaaaat ccagaaatag ttatctacca atacatggat
1021 gacttgtatg taggctctga tttagaaata gggcaacata gaacaaaaat agaggagtta
1081 agagctcatc tattgagctg gggatttact acaccagaca aaaagcatca gaaagaacct
1141 ccatttctgt ggatgggata tgaactccat cctgacaaat ggacagtcca gcctatagtg
1201 ctgccaaata aagatagctg gactgtcaat gatatacaga aattagtggg aaaattaaat
1261 tgggcaagtc agatttatcc agggattaaa gtaaggcaat tgtgtaaact cctcagggga
1321 gccaaagcac tgacagatat agtgacactg actgaggaag cagaattaga a
//