LOCUS       JX290014                 550 bp    DNA     linear   VRL 15-SEP-2012
DEFINITION  HIV-1 isolate CB3-SC-2 from Australia nef protein (nef) gene,
            partial cds.
ACCESSION   JX290014
VERSION     JX290014.1
KEYWORDS    .
SOURCE      Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1
            Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
            Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Gray,L., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C.,
            Wesselingh,S., Gorry,P. and Churchill,M.J.
  TITLE     Reduced basal transcriptional activity of central nervous
            system-derived HIV-1 long terminal repeats
  JOURNAL   AIDS Res. Hum. Retroviruses (2012) In press
   PUBMED   22924643
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Gray,L.R., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C.,
            Wesselingh,S.L., Gorry,P.R. and Churchill,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2012) Centre for Virology, Burnet Institute, 85
            Commercial Road, Melbourne, Victoria 3004, Australia
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Human immunodeficiency virus 1"
                     /proviral
                     /mol_type="genomic DNA"
                     /isolate="CB3-SC-2"
                     /host="Homo sapiens"
                     /db_xref="taxon:11676"
                     /country="Australia"
     repeat_region   <1..>550
                     /note="3' long terminal repeat"
                     /rpt_type=long_terminal_repeat
     gene            <1..329
                     /gene="nef"
     CDS             <1..329
                     /gene="nef"
                     /codon_start=3
                     /product="nef protein"
                     /protein_id="AFR45995.1"
                     /translation="EGLIYSQKRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGW
                     CFKLVPVDPDQVEKANEGENISLLHPMSQHGMDDSEKEVLQWKFDSRLAFRHIAQELH
                     PEYYKN"
BASE COUNT          147 a          130 c          147 g          126 t
ORIGIN      
        1 tggaagggct gatttactcc caaaaaagac aagatatcct tgatctgtgg atttaccaca
       61 cacaaggtta cttccctgat tggcagaatt acacaccagg gccagggatc agatatcccc
      121 tgacctttgg atggtgcttc aagctagtac cagttgatcc agatcaggta gaaaaggcca
      181 atgaaggaga gaacatcagc ttgttacacc ctatgagcca gcatgggatg gatgacagcg
      241 agaaagaagt gttacagtgg aagtttgaca gccgcctagc atttcgtcac atagcccaag
      301 agctgcatcc ggagtactac aaaaactgat gacaacgagc tttctacaag ggactttccg
      361 ctggggactt tccatgggag gcgtggactg ggcgggactg gggagtggcg agccctcaga
      421 tgctgcatat aagcagctgc tttctgcgtg tacggggtct ctctagctag accagatctg
      481 agcctgggag ctctctggct aactaggaac ccactgctta agcctcaata aagcttgcct
      541 tgagtgcttc
//