LOCUS JX290014 550 bp DNA linear VRL 15-SEP-2012 DEFINITION HIV-1 isolate CB3-SC-2 from Australia nef protein (nef) gene, partial cds. ACCESSION JX290014 VERSION JX290014.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 550) AUTHORS Gray,L., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C., Wesselingh,S., Gorry,P. and Churchill,M.J. TITLE Reduced basal transcriptional activity of central nervous system-derived HIV-1 long terminal repeats JOURNAL AIDS Res. Hum. Retroviruses (2012) In press PUBMED 22924643 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 550) AUTHORS Gray,L.R., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C., Wesselingh,S.L., Gorry,P.R. and Churchill,M.J. TITLE Direct Submission JOURNAL Submitted (08-JUL-2012) Centre for Virology, Burnet Institute, 85 Commercial Road, Melbourne, Victoria 3004, Australia FEATURES Location/Qualifiers source 1..550 /organism="Human immunodeficiency virus 1" /proviral /mol_type="genomic DNA" /isolate="CB3-SC-2" /host="Homo sapiens" /db_xref="taxon:11676" /country="Australia" repeat_region <1..>550 /note="3' long terminal repeat" /rpt_type=long_terminal_repeat gene <1..329 /gene="nef" CDS <1..329 /gene="nef" /codon_start=3 /product="nef protein" /protein_id="AFR45995.1" /translation="EGLIYSQKRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGW CFKLVPVDPDQVEKANEGENISLLHPMSQHGMDDSEKEVLQWKFDSRLAFRHIAQELH PEYYKN" BASE COUNT 147 a 130 c 147 g 126 t ORIGIN 1 tggaagggct gatttactcc caaaaaagac aagatatcct tgatctgtgg atttaccaca 61 cacaaggtta cttccctgat tggcagaatt acacaccagg gccagggatc agatatcccc 121 tgacctttgg atggtgcttc aagctagtac cagttgatcc agatcaggta gaaaaggcca 181 atgaaggaga gaacatcagc ttgttacacc ctatgagcca gcatgggatg gatgacagcg 241 agaaagaagt gttacagtgg aagtttgaca gccgcctagc atttcgtcac atagcccaag 301 agctgcatcc ggagtactac aaaaactgat gacaacgagc tttctacaag ggactttccg 361 ctggggactt tccatgggag gcgtggactg ggcgggactg gggagtggcg agccctcaga 421 tgctgcatat aagcagctgc tttctgcgtg tacggggtct ctctagctag accagatctg 481 agcctgggag ctctctggct aactaggaac ccactgctta agcctcaata aagcttgcct 541 tgagtgcttc //