LOCUS JX290002 565 bp DNA linear VRL 15-SEP-2012 DEFINITION HIV-1 isolate MACS1-BR-5 from USA nef protein (nef) gene, partial cds. ACCESSION JX290002 VERSION JX290002.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 565) AUTHORS Gray,L., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C., Wesselingh,S., Gorry,P. and Churchill,M.J. TITLE Reduced basal transcriptional activity of central nervous system-derived HIV-1 long terminal repeats JOURNAL AIDS Res. Hum. Retroviruses (2012) In press PUBMED 22924643 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 565) AUTHORS Gray,L.R., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C., Wesselingh,S.L., Gorry,P.R. and Churchill,M.J. TITLE Direct Submission JOURNAL Submitted (08-JUL-2012) Centre for Virology, Burnet Institute, 85 Commercial Road, Melbourne, Victoria 3004, Australia FEATURES Location/Qualifiers source 1..565 /organism="Human immunodeficiency virus 1" /proviral /mol_type="genomic DNA" /isolate="MACS1-BR-5" /host="Homo sapiens" /db_xref="taxon:11676" /country="USA" repeat_region <1..>565 /note="3' long terminal repeat" /rpt_type=long_terminal_repeat gene <1..332 /gene="nef" CDS <1..332 /gene="nef" /codon_start=3 /product="nef protein" /protein_id="AFR45983.1" /translation="EGLIHPQKRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGW CFKLVPVDPDEVEKANEGENSSLLHPISQHGMEDSEREVLVWKFDSRLAFHHMAREKY PEYYKNC" BASE COUNT 146 a 137 c 159 g 123 t ORIGIN 1 tggaagggct aattcacccc caaaagagac aagatatcct tgatctgtgg atctaccaca 61 cacaaggcta cttccctgat tggcagaact acacaccagg gccagggatc agatatccac 121 tgacctttgg gtggtgcttc aagctagtac cagttgatcc agatgaggta gaaaaggcca 181 atgaggggga aaacagcagc ctgttacacc ctataagcca gcatggaatg gaggactcgg 241 agagagaagt gttagtgtgg aagtttgaca gtcgcctagc attccatcac atggcccgag 301 agaagtatcc ggagtactac aagaactgct gacacaagaa ctgccgacat cgagcttcta 361 caagggactt tccgctgggg actttccagg ggaggcgtgg cctgggcggg actggggagt 421 ggcgagccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctgg 481 ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct 541 caataaagct tgccttgagt gcttc //