LOCUS       JX290002                 565 bp    DNA     linear   VRL 15-SEP-2012
DEFINITION  HIV-1 isolate MACS1-BR-5 from USA nef protein (nef) gene, partial
            cds.
ACCESSION   JX290002
VERSION     JX290002.1
KEYWORDS    .
SOURCE      Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1
            Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
            Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Gray,L., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C.,
            Wesselingh,S., Gorry,P. and Churchill,M.J.
  TITLE     Reduced basal transcriptional activity of central nervous
            system-derived HIV-1 long terminal repeats
  JOURNAL   AIDS Res. Hum. Retroviruses (2012) In press
   PUBMED   22924643
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Gray,L.R., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C.,
            Wesselingh,S.L., Gorry,P.R. and Churchill,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2012) Centre for Virology, Burnet Institute, 85
            Commercial Road, Melbourne, Victoria 3004, Australia
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Human immunodeficiency virus 1"
                     /proviral
                     /mol_type="genomic DNA"
                     /isolate="MACS1-BR-5"
                     /host="Homo sapiens"
                     /db_xref="taxon:11676"
                     /country="USA"
     repeat_region   <1..>565
                     /note="3' long terminal repeat"
                     /rpt_type=long_terminal_repeat
     gene            <1..332
                     /gene="nef"
     CDS             <1..332
                     /gene="nef"
                     /codon_start=3
                     /product="nef protein"
                     /protein_id="AFR45983.1"
                     /translation="EGLIHPQKRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGW
                     CFKLVPVDPDEVEKANEGENSSLLHPISQHGMEDSEREVLVWKFDSRLAFHHMAREKY
                     PEYYKNC"
BASE COUNT          146 a          137 c          159 g          123 t
ORIGIN      
        1 tggaagggct aattcacccc caaaagagac aagatatcct tgatctgtgg atctaccaca
       61 cacaaggcta cttccctgat tggcagaact acacaccagg gccagggatc agatatccac
      121 tgacctttgg gtggtgcttc aagctagtac cagttgatcc agatgaggta gaaaaggcca
      181 atgaggggga aaacagcagc ctgttacacc ctataagcca gcatggaatg gaggactcgg
      241 agagagaagt gttagtgtgg aagtttgaca gtcgcctagc attccatcac atggcccgag
      301 agaagtatcc ggagtactac aagaactgct gacacaagaa ctgccgacat cgagcttcta
      361 caagggactt tccgctgggg actttccagg ggaggcgtgg cctgggcggg actggggagt
      421 ggcgagccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctgg
      481 ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct
      541 caataaagct tgccttgagt gcttc
//