LOCUS JX289996 551 bp DNA linear VRL 15-SEP-2012 DEFINITION HIV-1 isolate CB1-CSF-5 from Australia nef protein (nef) gene, partial cds. ACCESSION JX289996 VERSION JX289996.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 551) AUTHORS Gray,L., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C., Wesselingh,S., Gorry,P. and Churchill,M.J. TITLE Reduced basal transcriptional activity of central nervous system-derived HIV-1 long terminal repeats JOURNAL AIDS Res. Hum. Retroviruses (2012) In press PUBMED 22924643 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 551) AUTHORS Gray,L.R., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C., Wesselingh,S.L., Gorry,P.R. and Churchill,M.J. TITLE Direct Submission JOURNAL Submitted (08-JUL-2012) Centre for Virology, Burnet Institute, 85 Commercial Road, Melbourne, Victoria 3004, Australia FEATURES Location/Qualifiers source 1..551 /organism="Human immunodeficiency virus 1" /proviral /mol_type="genomic DNA" /isolate="CB1-CSF-5" /host="Homo sapiens" /db_xref="taxon:11676" /country="Australia" repeat_region <1..>551 /note="3' long terminal repeat" /rpt_type=long_terminal_repeat gene <1..329 /gene="nef" CDS <1..329 /gene="nef" /codon_start=3 /product="nef protein" /protein_id="AFR45978.1" /translation="EGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFGW CFKLVPVDPDKVEKANEGENNCLLHPMSLHGMDDTEKEVLMWKFDSRLAFHHVARELH PEYYKN" BASE COUNT 142 a 132 c 151 g 126 t ORIGIN 1 tggaagggct aatttactcc cagaaaagac aagatatcct tgatctgtgg gtctaccaca 61 cacaaggcta cttccctgat tggcagaact acacaccagg gccagggacc agatatccac 121 tgacctttgg atggtgcttc aagctagtac cagttgaccc agataaggta gagaaggcca 181 atgaaggaga gaacaactgc ttgttacacc ctatgagcct gcatggaatg gatgacacag 241 agaaagaagt gttaatgtgg aagtttgaca gccgcctagc atttcatcat gtcgcccgag 301 agctgcatcc ggagtactat aaaaactgat gacaacgagc tttctacaag ggactttccg 361 ctggggactt tccaggggag gcgtggcctg ggcgggactg gggagtggcg agccctcaga 421 tgctgcatat aagcagctgc tttctgcttg tactgggtct ctctagttgg accagatctg 481 agcccgggag ctctctggct ggctagggaa cccactgctt aagcctcaat aaagcttgcc 541 ttgagtgctt c //