LOCUS       JX289996                 551 bp    DNA     linear   VRL 15-SEP-2012
DEFINITION  HIV-1 isolate CB1-CSF-5 from Australia nef protein (nef) gene,
            partial cds.
ACCESSION   JX289996
VERSION     JX289996.1
KEYWORDS    .
SOURCE      Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1
            Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
            Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Gray,L., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C.,
            Wesselingh,S., Gorry,P. and Churchill,M.J.
  TITLE     Reduced basal transcriptional activity of central nervous
            system-derived HIV-1 long terminal repeats
  JOURNAL   AIDS Res. Hum. Retroviruses (2012) In press
   PUBMED   22924643
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Gray,L.R., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C.,
            Wesselingh,S.L., Gorry,P.R. and Churchill,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2012) Centre for Virology, Burnet Institute, 85
            Commercial Road, Melbourne, Victoria 3004, Australia
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Human immunodeficiency virus 1"
                     /proviral
                     /mol_type="genomic DNA"
                     /isolate="CB1-CSF-5"
                     /host="Homo sapiens"
                     /db_xref="taxon:11676"
                     /country="Australia"
     repeat_region   <1..>551
                     /note="3' long terminal repeat"
                     /rpt_type=long_terminal_repeat
     gene            <1..329
                     /gene="nef"
     CDS             <1..329
                     /gene="nef"
                     /codon_start=3
                     /product="nef protein"
                     /protein_id="AFR45978.1"
                     /translation="EGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFGW
                     CFKLVPVDPDKVEKANEGENNCLLHPMSLHGMDDTEKEVLMWKFDSRLAFHHVARELH
                     PEYYKN"
BASE COUNT          142 a          132 c          151 g          126 t
ORIGIN      
        1 tggaagggct aatttactcc cagaaaagac aagatatcct tgatctgtgg gtctaccaca
       61 cacaaggcta cttccctgat tggcagaact acacaccagg gccagggacc agatatccac
      121 tgacctttgg atggtgcttc aagctagtac cagttgaccc agataaggta gagaaggcca
      181 atgaaggaga gaacaactgc ttgttacacc ctatgagcct gcatggaatg gatgacacag
      241 agaaagaagt gttaatgtgg aagtttgaca gccgcctagc atttcatcat gtcgcccgag
      301 agctgcatcc ggagtactat aaaaactgat gacaacgagc tttctacaag ggactttccg
      361 ctggggactt tccaggggag gcgtggcctg ggcgggactg gggagtggcg agccctcaga
      421 tgctgcatat aagcagctgc tttctgcttg tactgggtct ctctagttgg accagatctg
      481 agcccgggag ctctctggct ggctagggaa cccactgctt aagcctcaat aaagcttgcc
      541 ttgagtgctt c
//