LOCUS JX289990 478 bp DNA linear VRL 15-SEP-2012 DEFINITION HIV-1 isolate CB1-BR-2 from Australia nef protein (nef) gene, partial cds. ACCESSION JX289990 VERSION JX289990.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 478) AUTHORS Gray,L., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C., Wesselingh,S., Gorry,P. and Churchill,M.J. TITLE Reduced basal transcriptional activity of central nervous system-derived HIV-1 long terminal repeats JOURNAL AIDS Res. Hum. Retroviruses (2012) In press PUBMED 22924643 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 478) AUTHORS Gray,L.R., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C., Wesselingh,S.L., Gorry,P.R. and Churchill,M.J. TITLE Direct Submission JOURNAL Submitted (08-JUL-2012) Centre for Virology, Burnet Institute, 85 Commercial Road, Melbourne, Victoria 3004, Australia FEATURES Location/Qualifiers source 1..478 /organism="Human immunodeficiency virus 1" /proviral /mol_type="genomic DNA" /isolate="CB1-BR-2" /host="Homo sapiens" /db_xref="taxon:11676" /country="Australia" repeat_region <1..>478 /note="3' long terminal repeat" /rpt_type=long_terminal_repeat gene <1..332 /gene="nef" CDS <1..332 /gene="nef" /codon_start=3 /product="nef protein" /protein_id="AFR45972.1" /translation="EGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGW CFKLVPVDPDQVEKANEGENNCLLHPMSLHGMDDKEKEVLMWKFDSRLAFHHVARELH PEYYKNW" BASE COUNT 129 a 112 c 131 g 106 t ORIGIN 1 tggaagggct aatttactcc cagaaaagac aagatatcct tgatctgtgg gtctaccaca 61 cacaaggtta cttccctgat tggcagaact acacaccagg gccagggatc agatatccac 121 tgacctttgg atggtgcttc aagctagtcc cagttgaccc agatcaggta gaaaaggcca 181 atgaaggaga gaacaactgc ttgttacacc ctatgagcct gcatggaatg gatgacaaag 241 agaaagaagt gttaatgtgg aagtttgaca gccgcctagc atttcatcac gtcgcccgag 301 agctgcatcc ggagtactat aaaaactggt gacaacgagc tttctacaag ggactttccg 361 ctggggactt tccaggggag gcgtggcctg ggcgggactg gggagtggtg agccctcaga 421 tgctggctag ctgggaaccc actgcttaag cctcaataaa gcttgccttg agtgcttc //