LOCUS       JX289954                 548 bp    DNA     linear   VRL 15-SEP-2012
DEFINITION  HIV-1 isolate CB3-PBMC-5 from Australia nef protein (nef) gene,
            partial cds.
ACCESSION   JX289954
VERSION     JX289954.1
KEYWORDS    .
SOURCE      Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1
            Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
            Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Gray,L., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C.,
            Wesselingh,S., Gorry,P. and Churchill,M.J.
  TITLE     Reduced basal transcriptional activity of central nervous
            system-derived HIV-1 long terminal repeats
  JOURNAL   AIDS Res. Hum. Retroviruses (2012) In press
   PUBMED   22924643
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Gray,L.R., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C.,
            Wesselingh,S.L., Gorry,P.R. and Churchill,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2012) Centre for Virology, Burnet Institute, 85
            Commercial Road, Melbourne, Victoria 3004, Australia
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Human immunodeficiency virus 1"
                     /proviral
                     /mol_type="genomic DNA"
                     /isolate="CB3-PBMC-5"
                     /host="Homo sapiens"
                     /db_xref="taxon:11676"
                     /country="Australia"
     repeat_region   <1..>548
                     /note="3' long terminal repeat"
                     /rpt_type=long_terminal_repeat
     gene            <1..329
                     /gene="nef"
     CDS             <1..329
                     /gene="nef"
                     /codon_start=3
                     /product="nef protein"
                     /protein_id="AFR45936.1"
                     /translation="EGLIHSQKRQDILDLWVYHTQGYFPDWHNYTPGPGTRYPLTFGW
                     CFKLVPVDPDQVEKANEGENTSLLHPMSLHGMDDKEKEVLMWKFDSRLAFHHVARELH
                     PEYYKN"
BASE COUNT          146 a          135 c          145 g          122 t
ORIGIN      
        1 tggaagggct aattcactcc caaaaaagac aagatatcct tgatctgtgg gtctaccaca
       61 cacaaggcta cttccctgat tggcataact acacaccagg gccagggacc agatatccac
      121 tgacctttgg atggtgcttc aagctagtac cagttgatcc agatcaggta gagaaggcca
      181 atgaaggaga gaacaccagc ttgttacacc ctatgagcct gcatgggatg gatgacaaag
      241 agaaagaagt gttaatgtgg aagtttgaca gccgcctagc atttcaccac gtcgcccgag
      301 agctgcatcc ggagtattac aaaaactgat gacaacaaga ttctgcaagg gactttccgc
      361 tggggacttt ccagggaggt gtggcctggg cgggaccggg gagtggcgag ccctcagatg
      421 ctgcatataa gcagctgctt tctgcctgta ctgggtctct ctagctagac cagatttgag
      481 cccgggagct ctctggctaa ctaggaaccc actgcttaag cctcaataaa gcttgccttg
      541 agtgcttc
//