LOCUS JX289954 548 bp DNA linear VRL 15-SEP-2012 DEFINITION HIV-1 isolate CB3-PBMC-5 from Australia nef protein (nef) gene, partial cds. ACCESSION JX289954 VERSION JX289954.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 548) AUTHORS Gray,L., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C., Wesselingh,S., Gorry,P. and Churchill,M.J. TITLE Reduced basal transcriptional activity of central nervous system-derived HIV-1 long terminal repeats JOURNAL AIDS Res. Hum. Retroviruses (2012) In press PUBMED 22924643 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 548) AUTHORS Gray,L.R., Cowley,D., Crespan,E., Welsh,C., Mackenzie,C., Wesselingh,S.L., Gorry,P.R. and Churchill,M.J. TITLE Direct Submission JOURNAL Submitted (08-JUL-2012) Centre for Virology, Burnet Institute, 85 Commercial Road, Melbourne, Victoria 3004, Australia FEATURES Location/Qualifiers source 1..548 /organism="Human immunodeficiency virus 1" /proviral /mol_type="genomic DNA" /isolate="CB3-PBMC-5" /host="Homo sapiens" /db_xref="taxon:11676" /country="Australia" repeat_region <1..>548 /note="3' long terminal repeat" /rpt_type=long_terminal_repeat gene <1..329 /gene="nef" CDS <1..329 /gene="nef" /codon_start=3 /product="nef protein" /protein_id="AFR45936.1" /translation="EGLIHSQKRQDILDLWVYHTQGYFPDWHNYTPGPGTRYPLTFGW CFKLVPVDPDQVEKANEGENTSLLHPMSLHGMDDKEKEVLMWKFDSRLAFHHVARELH PEYYKN" BASE COUNT 146 a 135 c 145 g 122 t ORIGIN 1 tggaagggct aattcactcc caaaaaagac aagatatcct tgatctgtgg gtctaccaca 61 cacaaggcta cttccctgat tggcataact acacaccagg gccagggacc agatatccac 121 tgacctttgg atggtgcttc aagctagtac cagttgatcc agatcaggta gagaaggcca 181 atgaaggaga gaacaccagc ttgttacacc ctatgagcct gcatgggatg gatgacaaag 241 agaaagaagt gttaatgtgg aagtttgaca gccgcctagc atttcaccac gtcgcccgag 301 agctgcatcc ggagtattac aaaaactgat gacaacaaga ttctgcaagg gactttccgc 361 tggggacttt ccagggaggt gtggcctggg cgggaccggg gagtggcgag ccctcagatg 421 ctgcatataa gcagctgctt tctgcctgta ctgggtctct ctagctagac cagatttgag 481 cccgggagct ctctggctaa ctaggaaccc actgcttaag cctcaataaa gcttgccttg 541 agtgcttc //