LOCUS       JO316694                 616 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c58548_c mRNA sequence.
ACCESSION   JO316694
VERSION     JO316694.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          169 a           92 c          186 g          164 t
ORIGIN      
        1 ttgccatcgc atacaatgca gaaccatgaa caagtacact gccatcgcat agaatgccac
       61 tccaaagcta gaggaagggt ggggaatgca gggttatgaa tgagtgtact gccatcagat
      121 gtagatgtga gatgagtggt tggtggagtc gtagcaagct gtcgatgtga tgagcggctg
      181 gtggagtcgt agcaggctgt aggaagaatg cctgggatga gccgctgccc tgttcgctac
      241 agaggccact ggctgtagtt tgttgaggaa actgggggtt gcactggaca agcaagtggg
      301 gcagttaatg gacccttggt gattaatgtg tcatgcaaag gggaagaaac gaggggtgga
      361 agctgttgga ggagacggat tggcgtgatt tgcatttaga agttgcaaat ggctgcggta
      421 agctctgtac attactttag aggagtgctt ctttttcgtt tgctgtgaga tcttttaaaa
      481 gtttaaatgt tgaataattt cgtttgagat actttgcata gagaaggttt gaaaagattt
      541 tcaaaacagt atgcaaaata attttacatt cctcawwwma mcagagaagg ttcaaaaaga
      601 gtcggaatgg tgttgc
//