LOCUS       JO316629                 694 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c57888_c mRNA sequence.
ACCESSION   JO316629
VERSION     JO316629.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          179 a          182 c          161 g          167 t
ORIGIN      
        1 aacaagaaga aytagtgcgg ccattsccgc trcaaagaaa gaagtcttca tggtggcaga
       61 ctgctgtgga caacagccaa agtggcttct ggtggtggta ggggctactc cttcctcgct
      121 ggtgaggaat ccacgaccca ataacagggc ttataataat cggaggcatt cattscccgc
      181 cccctgtttc tggaggagga gcttcaatgc cccgcaagag ccaaaggcga tcttgctgtg
      241 tccatttgct ttccaacagc ctcgattttc aatccaatct catggagctt gatgtttgag
      301 gtgtcacgat gatggagata acctccagca tgagatgatg caactgcttg acaagacctg
      361 tttcctcttc ttaatgccag gtcgggtccc cgggacctcg actacgcaat gcgcccgtta
      421 agttaaatgg aattcaagtg aagccgtgcr ctacgttaag ctagatcaat gagtcggtgt
      481 agaattttga tagcgatcca gctttcaact ctcacagtct ggcgccggtc cagacgcccc
      541 cttcacagtg cacacactga taccaaggaa cactgccata ccagcccaaa cccatccaat
      601 ccaaaacaat caaactgatg caagacgaat gattgactgc gaattgctgc tcgtgctgag
      661 agtcgatctt ccgcctttcc aatttggaaa cttt
//