LOCUS JO316556 775 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c57139_c mRNA sequence. ACCESSION JO316556 VERSION JO316556.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 775) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 775) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..775 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 222 a 140 c 139 g 272 t ORIGIN 1 aagcaatgac tcctacaccg actacaatga acaatgttcc aaccatggca atatcctatg 61 ttgaacctcc attttggtgt tcaattcatt attatgaatt aaatcaacgt gtaggcgrra 121 cctttcatgc atcattgaat tcgttagtga tcgatggata ttgtgatcca aatgcatcgg 181 atagattttg tttgggttca ttaactaatg ttaatcgaac atcggaaagt gaaacatgtc 241 gacgaatgat tggatctggt gttcgacttt attatattgg tggagaagta tttgcagaat 301 gtctctctga ttcacctata tttgttcaaa gtcccagttg taatcaacgg tttaattggc 361 atccagcaac agtttgtaaa attcctccac gttgtaattt aaagatcttt agtaatccag 421 aatttgcacg aatgttatcc gatacaattc aacatggtta tgaagctgtt tataatctca 481 cacgaatctg tgctattcga atgagttttg tgaaaggttg gggagaagaa tatcgtcgac 541 gaacagtgat gagtacacca tgttgggtag aaattcatct caacggtcca atgcaatggt 601 tggataatgt tcttcggcaa tttcccgatg ccggtcctat ctccagcaaa taaacttata 661 cacatataca ttgaatcgac attttttctt ttcttttttt ctcttcgcgt ctttaattat 721 cgttcgtttt gtatctctat caatcgattt ctcatatcaa tattgaatat tttac //