LOCUS       JO316556                 775 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c57139_c mRNA sequence.
ACCESSION   JO316556
VERSION     JO316556.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          222 a          140 c          139 g          272 t
ORIGIN      
        1 aagcaatgac tcctacaccg actacaatga acaatgttcc aaccatggca atatcctatg
       61 ttgaacctcc attttggtgt tcaattcatt attatgaatt aaatcaacgt gtaggcgrra
      121 cctttcatgc atcattgaat tcgttagtga tcgatggata ttgtgatcca aatgcatcgg
      181 atagattttg tttgggttca ttaactaatg ttaatcgaac atcggaaagt gaaacatgtc
      241 gacgaatgat tggatctggt gttcgacttt attatattgg tggagaagta tttgcagaat
      301 gtctctctga ttcacctata tttgttcaaa gtcccagttg taatcaacgg tttaattggc
      361 atccagcaac agtttgtaaa attcctccac gttgtaattt aaagatcttt agtaatccag
      421 aatttgcacg aatgttatcc gatacaattc aacatggtta tgaagctgtt tataatctca
      481 cacgaatctg tgctattcga atgagttttg tgaaaggttg gggagaagaa tatcgtcgac
      541 gaacagtgat gagtacacca tgttgggtag aaattcatct caacggtcca atgcaatggt
      601 tggataatgt tcttcggcaa tttcccgatg ccggtcctat ctccagcaaa taaacttata
      661 cacatataca ttgaatcgac attttttctt ttcttttttt ctcttcgcgt ctttaattat
      721 cgttcgtttt gtatctctat caatcgattt ctcatatcaa tattgaatat tttac
//