LOCUS       JO316439                 896 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c56094_c mRNA sequence.
ACCESSION   JO316439
VERSION     JO316439.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 896)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          351 a          151 c          144 g          248 t
ORIGIN      
        1 gaacgtgaaa tgaatgaata ggaaagagaa attaactaaa catatgcaag tacaagagaa
       61 tagaattaaa acaagaaatt gaacccggaa ttcccgggaa atcaacaaat cgaggatagt
      121 aaatctcgaa atgatgaatt gaatagattc aaaacagagt taaatcaagt gaaaactaat
      181 tctgaagaac gtcttcgtga agaacgtgaa aaacatcgac atttatttct tgatcttcta
      241 cctgaagatc ttcgccaaca attaccatct aatcatcaaa atttcgatca atggtattca
      301 tcttatcgtc aactattcga attgaataag aaaaatactc aacaagaaac cgatgcactt
      361 cgacgtgaaa atgctcaaat tcttcagaat atgaccgata tcgaaaaaca attaaaagat
      421 attgaacaaa ctcttcagag taaagaagaa actttattaa cagaattaaa acataaagat
      481 gcaaccgtag aaaatcttcg tggtgaaaag atcatttaac gcatgaaatt caacatcttc
      541 gacaagaact tcaaacatta cgtgcaaagt atgatgctac tcagaacgaa gttcgaacat
      601 taaaagttca attaaatgaa cgatatatga tagcaactaa tagtccatca atcgttgctg
      661 ctgatgaatc gttcgaattg cttaaaacaa ccttcacctt cactatctcc aatccttgtt
      721 gatgttcgtg gagaaccatt caatgacatt ggacgatcga gtaaagaagg atcggttgaa
      781 agcgaacata gtgaaacatc gaaggttgat gattcaactg gatcttgatt tgaggcaata
      841 aaacaatcat tctttttttt yyttctttac ttctttctta gtttctattt atcaga
//