LOCUS JO316439 896 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c56094_c mRNA sequence. ACCESSION JO316439 VERSION JO316439.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 896) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 896) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..896 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 351 a 151 c 144 g 248 t ORIGIN 1 gaacgtgaaa tgaatgaata ggaaagagaa attaactaaa catatgcaag tacaagagaa 61 tagaattaaa acaagaaatt gaacccggaa ttcccgggaa atcaacaaat cgaggatagt 121 aaatctcgaa atgatgaatt gaatagattc aaaacagagt taaatcaagt gaaaactaat 181 tctgaagaac gtcttcgtga agaacgtgaa aaacatcgac atttatttct tgatcttcta 241 cctgaagatc ttcgccaaca attaccatct aatcatcaaa atttcgatca atggtattca 301 tcttatcgtc aactattcga attgaataag aaaaatactc aacaagaaac cgatgcactt 361 cgacgtgaaa atgctcaaat tcttcagaat atgaccgata tcgaaaaaca attaaaagat 421 attgaacaaa ctcttcagag taaagaagaa actttattaa cagaattaaa acataaagat 481 gcaaccgtag aaaatcttcg tggtgaaaag atcatttaac gcatgaaatt caacatcttc 541 gacaagaact tcaaacatta cgtgcaaagt atgatgctac tcagaacgaa gttcgaacat 601 taaaagttca attaaatgaa cgatatatga tagcaactaa tagtccatca atcgttgctg 661 ctgatgaatc gttcgaattg cttaaaacaa ccttcacctt cactatctcc aatccttgtt 721 gatgttcgtg gagaaccatt caatgacatt ggacgatcga gtaaagaagg atcggttgaa 781 agcgaacata gtgaaacatc gaaggttgat gattcaactg gatcttgatt tgaggcaata 841 aaacaatcat tctttttttt yyttctttac ttctttctta gtttctattt atcaga //