LOCUS       JO316115                 553 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c54357_c mRNA sequence.
ACCESSION   JO316115
VERSION     JO316115.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          194 a          103 c          108 g          148 t
ORIGIN      
        1 gtttatgcat ttgtccaaat ataataagga catcattcta atgaatacac tcttcttagt
       61 acccaatcct ttggctcaag tcctgaaaat ttgaagctaa gcgtcatttt ttgaaatgcg
      121 gataagaaaa tttaaggaga aaaggaaatg ctcaagtaga tgaacaatat aacaactaaa
      181 tcaaaactca gtcgggtggt aaggtgactt cttttgccta ttatgttcct gtgctactgt
      241 cttcacccga atagaacgcc ctgtcattat cgccgtatct agatagaaag ttgccccaga
      301 tacagctgta atgaccgggc gctctattcg ggtgaagacg gtagcttccg atagccaagt
      361 taatgcacgc aagtaaagaa ggtccataga aatacataaa cttgcataaa tattaaataa
      421 acgagtgaga cagtgacact gacattaaca aggcgaatag ataagtaaac aaatggataa
      481 ccaaactgtg taaacttgca aagtatgcct tagctagcag cagaatgaat agcatacagt
      541 tcattttgca gtc
//