LOCUS JO316115 553 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c54357_c mRNA sequence. ACCESSION JO316115 VERSION JO316115.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 553) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 553) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..553 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 194 a 103 c 108 g 148 t ORIGIN 1 gtttatgcat ttgtccaaat ataataagga catcattcta atgaatacac tcttcttagt 61 acccaatcct ttggctcaag tcctgaaaat ttgaagctaa gcgtcatttt ttgaaatgcg 121 gataagaaaa tttaaggaga aaaggaaatg ctcaagtaga tgaacaatat aacaactaaa 181 tcaaaactca gtcgggtggt aaggtgactt cttttgccta ttatgttcct gtgctactgt 241 cttcacccga atagaacgcc ctgtcattat cgccgtatct agatagaaag ttgccccaga 301 tacagctgta atgaccgggc gctctattcg ggtgaagacg gtagcttccg atagccaagt 361 taatgcacgc aagtaaagaa ggtccataga aatacataaa cttgcataaa tattaaataa 421 acgagtgaga cagtgacact gacattaaca aggcgaatag ataagtaaac aaatggataa 481 ccaaactgtg taaacttgca aagtatgcct tagctagcag cagaatgaat agcatacagt 541 tcattttgca gtc //