LOCUS JO316044 475 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c54070_c mRNA sequence. ACCESSION JO316044 VERSION JO316044.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 475) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 475) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..475 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 155 a 95 c 136 g 85 t ORIGIN 1 cagcaacaag aagaaccgac aggcatggca cgacgggcgc atttaagagc taatttgaac 61 ttgaaacaag gcatctggat tcactggaaa acaggtgaaa tttttgggtg atgagaaaag 121 gccactcaaa gatgagatgc attcgagaga aaggagtcgg ctctttgtca gtggcaaccc 181 tgcggagtca aaaaggattc cttgacacct cgcttcaatt tctgaaaacg ggatggagtc 241 aaaggacgag gagtggcctc tttggtgaat agatgagatg aaactgtgag ccaacacaca 301 acaagggcgt tcttcggtga gaagtcagac agacgcaaag gagggagagt gctcttcagg 361 ttcagcaaag gggccgagat cctgcggcca aaaarrgrrc gtaatttccc gccaatgaag 421 gagtccgaga caggcaagca ttgcacggga aaagaatgca agtacaagcc agaac //