LOCUS       JO316044                 475 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c54070_c mRNA sequence.
ACCESSION   JO316044
VERSION     JO316044.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          155 a           95 c          136 g           85 t
ORIGIN      
        1 cagcaacaag aagaaccgac aggcatggca cgacgggcgc atttaagagc taatttgaac
       61 ttgaaacaag gcatctggat tcactggaaa acaggtgaaa tttttgggtg atgagaaaag
      121 gccactcaaa gatgagatgc attcgagaga aaggagtcgg ctctttgtca gtggcaaccc
      181 tgcggagtca aaaaggattc cttgacacct cgcttcaatt tctgaaaacg ggatggagtc
      241 aaaggacgag gagtggcctc tttggtgaat agatgagatg aaactgtgag ccaacacaca
      301 acaagggcgt tcttcggtga gaagtcagac agacgcaaag gagggagagt gctcttcagg
      361 ttcagcaaag gggccgagat cctgcggcca aaaarrgrrc gtaatttccc gccaatgaag
      421 gagtccgaga caggcaagca ttgcacggga aaagaatgca agtacaagcc agaac
//