LOCUS JO315824 802 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c53338_c mRNA sequence. ACCESSION JO315824 VERSION JO315824.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 802) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 802) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..802 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 219 a 176 c 153 g 254 t ORIGIN 1 cgactcaagc agtggcgacg gcaattcttg tggtagaaaa aaccgaaatc gacgcgttgg 61 atgtccctgc aaaaccacac cgactgtgct agtggcgttt gacacaaaaa aaatagaagt 121 gtgcaggtac tacaacagca gcaccaacaa caacagcagc accaacaaca ccagcaccaa 181 caacaccagc accaacaaca cctgcaccaa caacacctgc cagtgatatt ctgtgcctga 241 atagatgcac aataacaaaa aaatatgagt ttcgacatgt attcatatcg atcgctccaa 301 actgtactac ttgtacgatt ggtggtgttc cttgcgctga tgcttgtagt actactagta 361 cttataattc tggtggtgtt ccttatcttt tttcctggta gtggtcatgg ttgtggcggt 421 attgtaactg atagtggtga tgatgcttgt cttgctgatc ctgatccttc taattctgat 481 tatggtggtg gtactcttgc tgctccttgt agtggtttta gtggttatgt ttactttgtt 541 gttgccaaac gaccacagga tgagagatat ggatatgatg gcaagaaatc acaaggacat 601 cgtgaaataa acttcaacta catttattca ctctcctttc ttcactctat ttatcttaat 661 cgttttgctc actttctctc acgattccat ctatatatct tattccgtat ttattcagtt 721 agctcttttc gcgttttcta tgcactaaaa tatctcttta tactctagtg gcggtagtga 781 tacacatatt taattaagcg ct //