LOCUS       JO315564                 873 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c52589_c mRNA sequence.
ACCESSION   JO315564
VERSION     JO315564.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          216 a          236 c          249 g          172 t
ORIGIN      
        1 taacgttctg tccctctgag cagggaggtt acatgtgaag caccccttcc tacaaaagga
       61 aattgcagca cgttcgacgc acttccctct agagtaaaaa aaactccagg atggctgacg
      121 aggggagcac gccagcggcg cccacagtga cgggcaggac agtgaaggac gtgcccgcgc
      181 acgagttcgt gaagcagtac gccgcgcacc tcaagcgcac cggcaaggtg gaggtgccga
      241 catgggctga cttggtgaag acaggaactt tcaaggaact tgcgccctat gaccccgact
      301 ggtactacgt gcgtgctgcg tctatggctc gtaagatcta tctgaagggc gcatgggcgt
      361 gggtgccttc aaaagaatct acggtggccg aagaacaacg ggtcgcggcc gtcgcacttc
      421 aagcgcagca gcggctccat cgcacgccac gtgctgcagc agctggaggg catgggcatc
      481 gtggaggagg accctcgcgg gggccggaag atcacatcgg acgggcaacg cgacttggac
      541 cgcatcgcat gccgcatcac tgtgccttct gctggcttct gaacctcctt ccaccaatga
      601 aagcccacct gcacccgtgt agacatttca atcgaatttt gttcctcata gtcggtgtca
      661 aaaaagaaat ttcactcaaa cttgcaggcg caccaccttc tgacatctgg aactgggcga
      721 atatgctaat tgctatgaca agtggtcaga catccgaaat gtagaagttt gaagtgtaca
      781 cggggaagca atgcaccatg gtaaagcttg gagaaccctg gtgtgtgaac acaccactac
      841 agtaaacttg ctccatgttt ggatgggtgc act
//