LOCUS JO315564 873 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c52589_c mRNA sequence. ACCESSION JO315564 VERSION JO315564.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 873) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 873) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..873 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 216 a 236 c 249 g 172 t ORIGIN 1 taacgttctg tccctctgag cagggaggtt acatgtgaag caccccttcc tacaaaagga 61 aattgcagca cgttcgacgc acttccctct agagtaaaaa aaactccagg atggctgacg 121 aggggagcac gccagcggcg cccacagtga cgggcaggac agtgaaggac gtgcccgcgc 181 acgagttcgt gaagcagtac gccgcgcacc tcaagcgcac cggcaaggtg gaggtgccga 241 catgggctga cttggtgaag acaggaactt tcaaggaact tgcgccctat gaccccgact 301 ggtactacgt gcgtgctgcg tctatggctc gtaagatcta tctgaagggc gcatgggcgt 361 gggtgccttc aaaagaatct acggtggccg aagaacaacg ggtcgcggcc gtcgcacttc 421 aagcgcagca gcggctccat cgcacgccac gtgctgcagc agctggaggg catgggcatc 481 gtggaggagg accctcgcgg gggccggaag atcacatcgg acgggcaacg cgacttggac 541 cgcatcgcat gccgcatcac tgtgccttct gctggcttct gaacctcctt ccaccaatga 601 aagcccacct gcacccgtgt agacatttca atcgaatttt gttcctcata gtcggtgtca 661 aaaaagaaat ttcactcaaa cttgcaggcg caccaccttc tgacatctgg aactgggcga 721 atatgctaat tgctatgaca agtggtcaga catccgaaat gtagaagttt gaagtgtaca 781 cggggaagca atgcaccatg gtaaagcttg gagaaccctg gtgtgtgaac acaccactac 841 agtaaacttg ctccatgttt ggatgggtgc act //