LOCUS       JO315434                 388 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c52236_c mRNA sequence.
ACCESSION   JO315434
VERSION     JO315434.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          122 a           95 c           71 g          100 t
ORIGIN      
        1 atatcttgta atgcgccacg tcccttagat aaattagctg cgcaaccacc aagtaataac
       61 aatggacttt cagccatttg agcatttttt attgcagtta ccgtattagt tagtccagga
      121 ccagcggtga caacacaaac accaatttta ccacttagac gtgagacggc atcagcagca
      181 aatgcagcat ttgcttcatg acgagtatca atgatacgta taccacgctt ctcacacgca
      241 accaatattg gtgatatatg accaccggat aaacaaaaca ggtagggaat tccatgagct
      301 tttaaaacat cagccacaag ttcaccaccg tatgccgtcg attcttcgtc aactttgtag
      361 acaaaagtgt atatccaacg tgtcccgg
//