LOCUS JO315260 873 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c51776_c mRNA sequence. ACCESSION JO315260 VERSION JO315260.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 873) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 873) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..873 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 356 a 78 c 88 g 351 t ORIGIN 1 agaatctatt attctatcta attattaaat aattgattat aaaaataatt cattgactat 61 aactataata aatatttgac tatatatata ctttaaatac attttaataa atatatatta 121 atagtataga aaacacagac atttacaata caaaatacag atatacataa cttttttatg 181 aatacaaata cttatgcaat tattgagaca ggaggtcatc aacttcgagt tgaagccggt 241 cgattctatg acactcgtca tttttctgtt ttgaaacctg atactaaaat tcttatatat 301 agagttgcta tgattcattt tcaatctcaa ttgatcattg gaaaaccctg gttagctaat 361 gcaattgtaa aagcacgtat tatacattca tataatagaa aaaaaaatca gagtttataa 421 aatgcactct aaaaagaaaa cgcgtaaaaa acaaggacat agacaaaaga taacacgatt 481 tatggtagat gctatttttt tgaatggtag aaatttatca ttataatagc ttattttttt 541 tatttatatt tatattttaa tatttatatg tttttaaaat tttatatctt tttaatatta 601 aattaatatg tttttgacat taatggtaat ttgtaaatct tcaaagttaa tattatattc 661 acatgaaata atatttaaag tttattattc aaatagaata ataatattaa ttcttgtttc 721 atttatttaa atttttagaa tatttgaaat ttgaatatat tttaatttaa atatgtttta 781 atatatgttt gttataaaaa aaaaatagtg tatattatca tatatatatg tatatatata 841 tggataatat atgataacat atagaaatga aat //