LOCUS JO313736 567 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c48590_c mRNA sequence. ACCESSION JO313736 VERSION JO313736.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 567) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 567) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..567 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 143 a 106 c 166 g 152 t ORIGIN 1 gccaggccct gctctacgga gttgagaaat gtaagtgtga acggatcggg aaagcgctat 61 gtgatcaagc cgctatgtga ttatagcttg agacgaggcg tccctggcgt tgcaagaaac 121 acgatgccaa tgcgaaatgt atatgggttt atgaaatcca attgaatttc aagctttcct 181 tcattcattg cactgtcagg cagtgccagg ctgccagcca gtacgatatt ctctgtgtga 241 ggatggagac cttcaaaagt cgtcctgttg agaagagagg caaatgggcc gggggagact 301 ttacctgacg aaattcaatg ataagcatgt gatcggcctc gtgagattga ctggtctgca 361 ctggctctgc aggggagctc tgacggcaag tttgtgcttc tgtaagtttg tttaagaact 421 cggtgagttt ggttctgtct aagaactcgg tgagtgtggt tctgcctgtt aaggaatcgg 481 tagagtctgg cagcgaggga cagtcaatct ctcaaatgta agttggtgga ccagagacat 541 gctgaattga ttagcagaat tgattag //