LOCUS JO312836 502 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c46831_c mRNA sequence. ACCESSION JO312836 VERSION JO312836.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 502) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 502) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..502 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 164 a 93 c 107 g 137 t ORIGIN 1 cggaaattcc cgggaacgaa atttaaagaa gaagaattta cttttgatga gctaaatagg 61 caattaaatg aaggagaact gaaaggacgt catccattgt acctcttcat gggtgctcag 121 ccttatactg tggaaggaac cgttattgta aagaatattc catacatagt cgtaatagat 181 tgcgctaagc ctccttccaa caaagttgcg gttgcttcta ttcaatctgg aggtgaacga 241 attgaatctt ttacaagatg gcacttagct tacgttccat atctcccaaa gagatttgct 301 tatgcaactg ctgatactcc ggctcaactt catactctaa agtgggaagc tagaagagct 361 gtagttagca aattcgatca agagaaggca cacaaagggt cagkttattg ttgccatatg 421 aactgcttcc aagaactttg gaagattatc cattggaaaa gagacttgca gaagtcaaga 481 acgttgaact cagatttaaa gc //