LOCUS       JO311767                 444 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c45024_c mRNA sequence.
ACCESSION   JO311767
VERSION     JO311767.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          135 a          123 c           68 g          117 t
ORIGIN      
        1 agtgagcatt cttgtcattc acattctttg cttcaataca atgtttgaag tttactttac
       61 acctgatcta accaatcaac ccccttcctc ccctgcagtc ycttcctcct atgaaattta
      121 cgacaactgc atctgctact ggtactcatc tgctactggt actcttcttc aacaagggcg
      181 cttcgcaggg gacaaagcca gcgacattgt aagaggccgc tttatcttaa aaacagtcca
      241 aaaagctatg caggtcgaat tcacacagta agttttcacc acaactattc cagcgactga
      301 cggttcaaaa actgataacg tgggctaaat cacttgattt tatccatcgg ccagcccttg
      361 attttaatca cactatgata caacaactga cacgatgatg gatatggtaa cacacacaca
      421 cacacacaca cacacacaca caca
//