LOCUS JO311767 444 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c45024_c mRNA sequence. ACCESSION JO311767 VERSION JO311767.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 444) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 444) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..444 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 135 a 123 c 68 g 117 t ORIGIN 1 agtgagcatt cttgtcattc acattctttg cttcaataca atgtttgaag tttactttac 61 acctgatcta accaatcaac ccccttcctc ccctgcagtc ycttcctcct atgaaattta 121 cgacaactgc atctgctact ggtactcatc tgctactggt actcttcttc aacaagggcg 181 cttcgcaggg gacaaagcca gcgacattgt aagaggccgc tttatcttaa aaacagtcca 241 aaaagctatg caggtcgaat tcacacagta agttttcacc acaactattc cagcgactga 301 cggttcaaaa actgataacg tgggctaaat cacttgattt tatccatcgg ccagcccttg 361 attttaatca cactatgata caacaactga cacgatgatg gatatggtaa cacacacaca 421 cacacacaca cacacacaca caca //