LOCUS       JO311576                 618 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c44706_c mRNA sequence.
ACCESSION   JO311576
VERSION     JO311576.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          165 a          117 c          134 g          185 t
ORIGIN      
        1 tcaagggtta tccccccatg ttttgaaaag ttaaaatttc acgggggagt tgcaaagttt
       61 agcagtgcct gcatcgagac ctctgaggct taaactgcag gtyacaaaac acagcscwct
      121 scacagtgaa atgcatgcgt ttcactcttc acgagtgatg tttctcacca ggaagtcggg
      181 gtacttaggt ttaagataaa tctttttgac accgcaaggg tggatggctr gagattgtga
      241 gcagaaaatc tagttcttga accttgcgtt aaattttgtw ttcygttayc ttttgaaaag
      301 ccttyttcat ttcaaatatc tttatgacak cattagcggg aaaaagggtc tttttgatkt
      361 caattcctga tccytgggat aggttgctgt tgtagtcytc aacccaaatg ttgttgatat
      421 yttggacaaa tgggaaggta sgcccaktag grgtaccgtc tccgagagac aaaatagttc
      481 aagagggtat gaaagccttg cttcgaacct tcttcttaat accagccacg gatttctttc
      541 gaaatattgc tctgtattct tgggcaatct ttgaagatgg cgatgcaaaa acctccaaca
      601 gcgcttttgg aacattta
//