LOCUS       JO311520                 376 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c44597_c mRNA sequence.
ACCESSION   JO311520
VERSION     JO311520.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 376)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT           88 a           51 c           70 g          167 t
ORIGIN      
        1 ttattttcaa taaaagaaaa caataagttc ttagtaaacg tgttactact agttgttgat
       61 tcgattcagc tagatgtttg tcagcttgaa ccgtatttgt ctgtttctgc atggcgagaa
      121 tgttttgtaa tcgttttgat tcgttggttg ataactgata tttcaatatt attcggattt
      181 ggatgaaatt ctttcatttt ctgtttgtgc ttttcttgct gttcttctaa tttttttcag
      241 tagttctttt gccatgaatc ttggaattat tctctgaata gatcttcttc atcttcttcg
      301 ttaatcattt ggtatagacc atcgctgaat gggatcgttt gttgtcgtag atgatttgta
      361 ttgatcaaga attgag
//