LOCUS       JO311399                 495 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c44401_c mRNA sequence.
ACCESSION   JO311399
VERSION     JO311399.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          152 a          101 c           90 g          152 t
ORIGIN      
        1 tttttggttg acaacatatg gatgattgga ggaaggccat caaccaatgg aaggccaatc
       61 caagtaacct cgaccttcgt tatatgaacc tcgggaagaa ggagctcttt atcttgcaaa
      121 cgttttgaag tcgactgatc tttctactaa agcttttggt gactttgaaa gtttttcaat
      181 ttcaagtaat gatgttggtg ataaagggct tatgtatatt attgatggga ttcttcatag
      241 ccctttcact agattaaaaa acatttgacg tatctttcaa caattgcact caatgttgtg
      301 gagcctccct catcaggctt cttgaaaact cgaacatcac agagcctttt tttgtgggaa
      361 atgaaatgga tccaagcact gaagcacaaa tttttcgttt gattgaacaa aacaaataac
      421 aaaaagactt ccagaatttt caccagtccc acttctgcca gtataactgc acctgcctct
      481 ccaaacactc aagat
//