LOCUS JO311264 511 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c44164_c mRNA sequence. ACCESSION JO311264 VERSION JO311264.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 511) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 511) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..511 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 159 a 78 c 109 g 144 t ORIGIN 1 gaatgtacaa tcttaaagcc atttggaaaa ggtagaaagc tccgaaaacg aactkaggat 61 artttgcaca tttgtttttc aaagaagatg atcgacatct ttggggggat gtttagctrg 121 aagcattttc tggtttacgt actyaatgta caaagtactg ctgcgaaagc cacccaactt 181 gcgcccaagc tgagyctgag tgcataayga tgggttaaat acgtcagaag tcttattgay 241 ytgttaataa ataggaaaag ttgtatgcaa atgasgagtt gtgaggrgag agagrrgtag 301 mgagacgggg tcaagacggg tcacgccttg tgacatgtct tttgtgycta tgcaatgata 361 artttktctc aagcctwaac tctaaaagca aacagawgta atwtcrgatt agtttsaatt 421 gtaattagtt tttaaaaact aaaatctatt tctatttaca atctcttata ctccaggtgc 481 agtgccaaac aaggcgctgt catgaatcaa t //