LOCUS JO310572 410 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c43051_c mRNA sequence. ACCESSION JO310572 VERSION JO310572.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 410) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 410) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..410 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 80 a 109 c 97 g 124 t ORIGIN 1 cggacaactg ctcgtaatcg gtctggtgcg cagaagaagt cgacaaacac gttacgctcc 61 agcctgactt cgtggggatg atgtctcaca atctctgctc tgttacgatg ttcacgtgtc 121 agcatctcta ttttaatcga cagctccgtg ttcgcagctt cgagctctgc aagcgcgtct 181 tgcaacacct gcggcgtgag ctgtggctga gctgtagctg ctgaggcaaa caacagccgc 241 tgcatctggt cgatcatact gtaaatgttc tgttgatgca agcccttttc tcaaatgcca 301 gcttctcttc caactctttt gtctgcagat ccagctcagc tcgcagttgt gttattttct 361 tgaccagtat gtctataacc atggtctctg gcggctagtt tgttgtcctt //