LOCUS       JO310540                 635 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c43005_c mRNA sequence.
ACCESSION   JO310540
VERSION     JO310540.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          219 a          115 c          115 g          186 t
ORIGIN      
        1 aaaagctaaa gtaaccgaga cagatatatt aatgatccaa acgattgaaa agaaaagatt
       61 tagtgaagaa gatttattaa aattaaaagg aaatttatta aaattagaga aaaaatgtcg
      121 taaactttta tcaaaacgtc aacagcttat caaagagtat gatattgatg aatcattgat
      181 taatcctact gcagtcgatt acctcttctt cttcatcttc atcatcatca gcatcgacaa
      241 tagtgaacgc tgttaatcct gtcgtgacat cagttccatc atctgatggt gtgagcgagg
      301 ttgccccctc agaagactcg cactgaatca ccaaccagcg agacaagctc taaggtttcg
      361 gcggttacaa ctccgagtcg aaagattcat aattttgtct tatcctcctc atctgcttca
      421 tctccttcga gaaatggaac acaagcagtg ggtgaaggaa gtccgatcgg atcacctcgt
      481 gttggtgatc atcgaaagaa ctaaatatga gatagttttc gatatacagt agataagttt
      541 agctaaagct ctagaatatc atctaattca tcaaaatttg attggtttag tgaccttact
      601 actttatcga gttaataact aattgaaaga gaatg
//