LOCUS JO310540 635 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c43005_c mRNA sequence. ACCESSION JO310540 VERSION JO310540.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 635) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 635) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..635 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 219 a 115 c 115 g 186 t ORIGIN 1 aaaagctaaa gtaaccgaga cagatatatt aatgatccaa acgattgaaa agaaaagatt 61 tagtgaagaa gatttattaa aattaaaagg aaatttatta aaattagaga aaaaatgtcg 121 taaactttta tcaaaacgtc aacagcttat caaagagtat gatattgatg aatcattgat 181 taatcctact gcagtcgatt acctcttctt cttcatcttc atcatcatca gcatcgacaa 241 tagtgaacgc tgttaatcct gtcgtgacat cagttccatc atctgatggt gtgagcgagg 301 ttgccccctc agaagactcg cactgaatca ccaaccagcg agacaagctc taaggtttcg 361 gcggttacaa ctccgagtcg aaagattcat aattttgtct tatcctcctc atctgcttca 421 tctccttcga gaaatggaac acaagcagtg ggtgaaggaa gtccgatcgg atcacctcgt 481 gttggtgatc atcgaaagaa ctaaatatga gatagttttc gatatacagt agataagttt 541 agctaaagct ctagaatatc atctaattca tcaaaatttg attggtttag tgaccttact 601 actttatcga gttaataact aattgaaaga gaatg //