LOCUS JO310322 639 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c42663_c mRNA sequence. ACCESSION JO310322 VERSION JO310322.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 639) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 639) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..639 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 183 a 108 c 188 g 150 t ORIGIN 1 gagtatatta caaaagkwat tscyksgatg ttttttggct ttgagaggta gtaggggttt 61 gctcgttcca cttgaccatg caagaaacgt cggaacctgg actttacacc ggaggcttgt 121 tggggaccga ttgtgccttt acaagcacag actctgtgct tgtcacatga gcaatgggac 181 ggaatcgcaa gctggtaaag ttatggtagg ggcttagagt cccatgttta gkacacatac 241 cgtgagggaa cgagggccgt ggttgrgaaa aactcagcgg catggaactc tgsgacgagc 301 accaattggg acgggacgtg aaatcagtgg atatgctttc gttgacgwgg aatccgggct 361 aacattggtg atcacataat cgagcaaact tggaaaactt acgtagcgcc catcgattaa 421 cggaaggaat atcaatcaag caaatggaga aagagttcgc gggggttggt tgggaaaagc 481 tgggcaacat gagctgtgcg acgacgacag ttggttggga tgggaacttg acaaatgggt 541 gcaaattgag aacaagagca ttggtgctga tggttagtaa acactaaaca gtgtggatga 601 aatactaaat tgtaaagatg ctgtacaagt gcactgatt //