LOCUS JO309810 627 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c41832_c mRNA sequence. ACCESSION JO309810 VERSION JO309810.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 627) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 627) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..627 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 207 a 100 c 121 g 198 t ORIGIN 1 gatgccgtgg atgacagtac nctgtatcta cttatacgaa gtattaaaga aaaaaagatt 61 aaaaaaaaga agaagtatag atgttacata aaactatgtt aaaataatct tatctatgtt 121 ttagagtgaa gttagaaaag gttggaaaat gttttttgaa taaaaaagta aattctggaa 181 gagttaacaa tcctgaactg ttggcaccaa tttattgata tcaacaccga tgttagtaaa 241 agctttctcg gcttttctca atttgttttg atggagcttt tttgttcgtg agagaatata 301 accaaattca acattggcac caatgttagg aaaaaaccgg caggaataca cggcggcgta 361 ccgtttgtaa tctgtttcaa gaacattata gccaccttct tgaccatttc caaaaaacta 421 ctcgcaaagc agccggaaca gttgggatcg atgactgttg caagacctag aatggtgatg 481 tattcacctt gtgcagttat tgcttgattg aatactgtca ctgttccatt gggattgagt 541 gtgtacgttg cattatcact atttattacc cgcttgaaaa atactgaata ttcgtgcata 601 ttcgtaccag aagccagtat attcttt //