LOCUS JO307606 410 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c38371_c mRNA sequence. ACCESSION JO307606 VERSION JO307606.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 410) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 410) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..410 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 138 a 86 c 61 g 125 t ORIGIN 1 cgtataacca cgaagagcac caacaataag agcaccataa taacgacatg catcatacgc 61 ttttgtatct ccatgagtaa gtttgccact ttgacctgaa tattctactg catataatgg 121 aaatcgatag aaaaataatg gcacaggtgc gagacgcatc agtgctccat taccagccac 181 ttcatcttca ctacaataaa ctgaaaattc attaagatat tcttcatcat gaatagtatc 241 tatttgttca agtggaatgt caattttttt gcaaaattct tcttgtcgac gttcaaattc 301 ttctaaagat tgttttgttg cagcaccaat atcaaagcag tctcctgtcg atgacatata 361 tccatatcga aaccaccaat ttatatacgt accaattgat cgtaaggaat //