LOCUS JO306104 529 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c36050_c mRNA sequence. ACCESSION JO306104 VERSION JO306104.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 529) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 529) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..529 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 142 a 133 c 130 g 115 t ORIGIN 1 cgaagtcagc gacatctcgt tggtggatta cattgctgtc ggcggaaata taccattttt 61 gttccacaca cagctgggcg ttatcagacg aaaggtttcg caaagcccaa tgccccatmr 121 tksmsrggwt gacgaactcg ttgatgatgc acggccgtaa caatggaaag aattaatggc 181 agtacggatc gttaagcayg cgatggagat cattcacttg ctgaccgacc agaacccgat 241 tcaggtcgtc gtcgacgcag tcatcaacag cggtccccga gaagacgcta cccgaattgg 301 ctcggctggt gttatccgtc gacaggccgt cgatatttcc cctctccgta gagtcaatca 361 agccatctat ttgatcacta cgggcgctag ggagagcgca ttccgtaaca tcaagaccat 421 cgctgaatgc ttggcagatg aacttatcaa tgccgaccaa aaggttcatc aaacagctac 481 gctatcaaga agaaggatga aatcgagcgc gtcgccaagg caaatcgtt //