LOCUS       JO306104                 529 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c36050_c mRNA sequence.
ACCESSION   JO306104
VERSION     JO306104.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          142 a          133 c          130 g          115 t
ORIGIN      
        1 cgaagtcagc gacatctcgt tggtggatta cattgctgtc ggcggaaata taccattttt
       61 gttccacaca cagctgggcg ttatcagacg aaaggtttcg caaagcccaa tgccccatmr
      121 tksmsrggwt gacgaactcg ttgatgatgc acggccgtaa caatggaaag aattaatggc
      181 agtacggatc gttaagcayg cgatggagat cattcacttg ctgaccgacc agaacccgat
      241 tcaggtcgtc gtcgacgcag tcatcaacag cggtccccga gaagacgcta cccgaattgg
      301 ctcggctggt gttatccgtc gacaggccgt cgatatttcc cctctccgta gagtcaatca
      361 agccatctat ttgatcacta cgggcgctag ggagagcgca ttccgtaaca tcaagaccat
      421 cgctgaatgc ttggcagatg aacttatcaa tgccgaccaa aaggttcatc aaacagctac
      481 gctatcaaga agaaggatga aatcgagcgc gtcgccaagg caaatcgtt
//