LOCUS JO305027 449 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c34339_c mRNA sequence. ACCESSION JO305027 VERSION JO305027.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 449) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 449) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..449 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 131 a 90 c 109 g 119 t ORIGIN 1 aagcctgctg ccaaaagcaa agcaaaacca gtttccaagc cagatgaatc attgccagag 61 ttggagaagt ttttggttga aatgtataat tggcctgatg ttactgatat cttggcagtc 121 aagcatttca aagaagcaat ggaagagttc tcggctattg gtgatttccg tgctcagttg 181 aaggaagacc ttgaagtttg ctatggaaag aagcgtatgc cgcgtacacc gaagaagttg 241 acctacaaga tgccgccatg tcctattaca aagacagctc gtgtgattga ctttgacgtt 301 gacattaatt cgcaatctac tggcaatagt gatgtgattg ctatgttggg agttgttcca 361 gagacaccgt ccaaagaaga ttcaggcgca aggttcaagt ttcaagttcc tccaatggat 421 gatgctgcca acaagtccca atcgccgta //